Variant report

Variant	rs13233398
Chromosome Location	chr7:103672960-103672961
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10225526	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10246098	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10254126	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10276148	0.84[EUR][1000 genomes]
rs12705173	0.81[EUR][1000 genomes]
rs4385393	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6465959	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6978755	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7780591	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7797463	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888924	chr7:103637906-103706936	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1018253	chr7:103669491-103731850	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13233398	STAG3	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103672000-103673600	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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