Variant report

Variant	rs10246098
Chromosome Location	chr7:103705172-103705173
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10225526	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10254126	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10276148	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1035169	0.83[JPT][hapmap]
rs10808128	0.83[JPT][hapmap]
rs10953408	0.83[JPT][hapmap];0.82[MEX][hapmap]
rs12056191	0.83[JPT][hapmap]
rs12705173	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12705180	0.83[JPT][hapmap]
rs12705187	0.83[JPT][hapmap]
rs12705190	0.83[JPT][hapmap]
rs13233398	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13238183	0.82[JPT][hapmap]
rs193888	0.82[MEX][hapmap]
rs194837	0.83[JPT][hapmap]
rs194841	0.82[JPT][hapmap]
rs194846	0.83[JPT][hapmap]
rs194847	0.82[JPT][hapmap]
rs194849	0.83[JPT][hapmap];0.88[MEX][hapmap]
rs194851	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs194857	0.83[JPT][hapmap]
rs194858	0.87[JPT][hapmap]
rs194861	0.83[JPT][hapmap]
rs194865	0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs194867	0.83[JPT][hapmap]
rs194868	0.82[JPT][hapmap];0.88[MEX][hapmap];0.80[TSI][hapmap]
rs2160397	0.81[JPT][hapmap]
rs2245659	0.83[JPT][hapmap]
rs2299408	0.83[JPT][hapmap]
rs2299411	0.83[JPT][hapmap]
rs2385140	0.82[MEX][hapmap]
rs3779518	0.83[JPT][hapmap]
rs3808008	0.83[JPT][hapmap]
rs4265123	0.81[JPT][hapmap]
rs4385393	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6465959	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6948583	0.83[JPT][hapmap]
rs6961262	0.83[JPT][hapmap]
rs6978755	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7780591	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7797463	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888924	chr7:103637906-103706936	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1018253	chr7:103669491-103731850	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103704800-103705800	Enhancers	HepG2	liver
2	chr7:103705000-103705800	Enhancers	Liver	Liver

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