Variant report

Variant	rs194851
Chromosome Location	chr7:103778490-103778491
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:103769885..103772805-chr7:103778154..103780939,3	K562	blood:
2	chr7:103773857..103776451-chr7:103778277..103781105,4	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10225526	0.81[ASN][1000 genomes]
rs10276148	0.85[ASN][1000 genomes]
rs1035169	0.83[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10808128	0.83[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10953408	0.83[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs113877	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12056186	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12056191	0.83[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12705180	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12705181	0.89[ASN][1000 genomes]
rs12705187	0.84[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12705188	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12705190	0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12705191	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12705192	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12705193	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12705195	0.84[ASN][1000 genomes]
rs13230700	0.86[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs13238183	0.83[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs193888	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs194837	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs194838	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs194841	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs194846	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs194847	0.82[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs194849	0.81[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs194857	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs194858	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs194859	0.81[CEU][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs194861	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs194865	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs194867	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs194868	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2160397	0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2245659	0.83[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2283035	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2299408	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2299409	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2299411	0.83[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2385140	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs34096272	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35034355	0.84[ASN][1000 genomes]
rs3757734	0.86[ASN][1000 genomes]
rs3779518	0.83[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3808008	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3808009	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3808010	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3823979	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4265123	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs4265124	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs4385393	0.81[ASN][1000 genomes]
rs62485910	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6465959	0.81[ASN][1000 genomes]
rs6948583	0.83[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6961262	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs765408	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs7780591	0.81[ASN][1000 genomes]
rs9768749	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103761400-103778600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:103763400-103779400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr7:103763800-103815000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:103764000-103783200	Weak transcription	NHLF	lung
5	chr7:103764000-103829800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr7:103764400-103820200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr7:103765600-103815000	Weak transcription	Brain Angular Gyrus	brain
8	chr7:103765600-103840200	Weak transcription	Small Intestine	intestine
9	chr7:103766200-103779000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr7:103766200-103779000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:103766200-103800000	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr7:103766200-103803800	Weak transcription	Pancreas	Pancrea
13	chr7:103766200-103816000	Weak transcription	Brain Substantia Nigra	brain
14	chr7:103766200-103823600	Weak transcription	Esophagus	oesophagus
15	chr7:103766200-103838400	Weak transcription	Spleen	Spleen
16	chr7:103766400-103822600	Weak transcription	Colon Smooth Muscle	Colon
17	chr7:103767200-103779000	Weak transcription	Fetal Brain Male	brain
18	chr7:103767200-103829200	Weak transcription	Gastric	stomach
19	chr7:103767200-103843600	Weak transcription	Right Ventricle	heart
20	chr7:103767600-103779000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr7:103767600-103820200	Weak transcription	Brain Germinal Matrix	brain
22	chr7:103768000-103779800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr7:103769200-103778800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr7:103769200-103822600	Weak transcription	Fetal Kidney	kidney
25	chr7:103769400-103778600	Strong transcription	Primary B cells from peripheral blood	blood
26	chr7:103769400-103778600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr7:103769400-103779800	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr7:103770000-103778800	Strong transcription	Primary T cells from cord blood	blood
29	chr7:103770600-103778600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr7:103770800-103778600	Strong transcription	Fetal Muscle Leg	muscle
31	chr7:103770800-103778800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr7:103771800-103800000	Weak transcription	HSMM	muscle
33	chr7:103771800-103804400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr7:103771800-103807200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr7:103771800-103820000	Weak transcription	NHEK	skin
36	chr7:103772200-103792000	Weak transcription	Aorta	Aorta
37	chr7:103773200-103822800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr7:103773400-103782600	Weak transcription	HUVEC	blood vessel
39	chr7:103773600-103778600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr7:103773600-103781000	Weak transcription	HSMMtube	muscle
41	chr7:103773800-103778800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr7:103774000-103778600	Strong transcription	Fetal Thymus	thymus
43	chr7:103774600-103781000	Weak transcription	HepG2	liver
44	chr7:103774600-103803600	Weak transcription	Ovary	ovary
45	chr7:103774800-103802800	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr7:103775200-103829200	Weak transcription	Lung	lung
47	chr7:103775400-103803400	Weak transcription	Left Ventricle	heart
48	chr7:103775800-103803800	Weak transcription	Primary hematopoietic stem cells	blood
49	chr7:103776400-103778600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr7:103776600-103779000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links