Variant report

Variant	rs34096272
Chromosome Location	chr7:103822122-103822123
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:103814607..103816187-chr7:103821734..103824304,2	K562	blood:
2	chr7:103820510..103823425-chr7:103831806..103833927,2	MCF-7	breast:
3	chr7:103820850..103822660-chr7:103828536..103831512,3	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10808128	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs113877	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12056186	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12056191	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12705181	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12705186	0.84[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs12705187	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12705188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12705190	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12705191	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12705192	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12705193	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13230700	0.81[AMR][1000 genomes]
rs194837	0.85[EUR][1000 genomes]
rs194838	0.85[EUR][1000 genomes]
rs194841	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs194846	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs194849	0.80[AMR][1000 genomes]
rs194851	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs194857	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs194858	0.80[AMR][1000 genomes]
rs194861	0.85[EUR][1000 genomes]
rs194865	0.80[AMR][1000 genomes]
rs194867	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs194868	0.80[AMR][1000 genomes]
rs2160397	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2283035	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2299408	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2299409	0.81[AMR][1000 genomes]
rs35034355	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs3757734	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3779518	0.91[EUR][1000 genomes]
rs3808008	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3823979	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4140860	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4265124	0.84[EUR][1000 genomes]
rs4385404	0.83[EUR][1000 genomes]
rs62485910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6948583	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6961262	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs765408	0.83[EUR][1000 genomes]
rs9768749	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019640	chr7:103813522-103884705	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
2	nsv1026481	chr7:103813522-103890770	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
3	esv2762692	chr7:103813522-103890782	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
4	nsv526062	chr7:103817597-103891085	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
5	nsv608065	chr7:103817597-103990755	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103764000-103829800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:103765600-103840200	Weak transcription	Small Intestine	intestine
3	chr7:103766200-103823600	Weak transcription	Esophagus	oesophagus
4	chr7:103766200-103838400	Weak transcription	Spleen	Spleen
5	chr7:103766400-103822600	Weak transcription	Colon Smooth Muscle	Colon
6	chr7:103767200-103829200	Weak transcription	Gastric	stomach
7	chr7:103767200-103843600	Weak transcription	Right Ventricle	heart
8	chr7:103769200-103822600	Weak transcription	Fetal Kidney	kidney
9	chr7:103773200-103822800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr7:103775200-103829200	Weak transcription	Lung	lung
11	chr7:103776800-103822800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr7:103781600-103822800	Weak transcription	HSMMtube	muscle
13	chr7:103781800-103822400	Weak transcription	Fetal Muscle Trunk	muscle
14	chr7:103791200-103822800	Weak transcription	Brain Anterior Caudate	brain
15	chr7:103796400-103843600	Weak transcription	Fetal Brain Male	brain
16	chr7:103797200-103847000	Weak transcription	Fetal Heart	heart
17	chr7:103797400-103822600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr7:103798400-103829600	Weak transcription	Rectal Smooth Muscle	rectum
19	chr7:103800000-103822200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr7:103800800-103829600	Weak transcription	NHLF	lung
21	chr7:103802200-103838600	Weak transcription	Psoas Muscle	Psoas
22	chr7:103802400-103822600	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr7:103804200-103823000	Weak transcription	Thymus	Thymus
24	chr7:103804200-103824800	Weak transcription	Pancreas	Pancrea
25	chr7:103805000-103822600	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr7:103808000-103822600	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr7:103809000-103822200	Weak transcription	Placenta	Placenta
28	chr7:103809400-103838200	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr7:103812800-103822200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr7:103815200-103823200	Weak transcription	Brain Angular Gyrus	brain
31	chr7:103815200-103823200	Weak transcription	Ovary	ovary
32	chr7:103815400-103839200	Weak transcription	Colonic Mucosa	Colon
33	chr7:103815600-103829200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr7:103815600-103829200	Weak transcription	Aorta	Aorta
35	chr7:103815600-103838400	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr7:103815800-103823400	Weak transcription	Fetal Intestine Small	intestine
37	chr7:103816000-103846200	Weak transcription	Stomach Mucosa	stomach
38	chr7:103816800-103836600	Weak transcription	Brain Substantia Nigra	brain
39	chr7:103817400-103827800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr7:103817600-103822600	Weak transcription	Brain Cingulate Gyrus	brain
41	chr7:103817600-103823600	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr7:103817800-103824800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr7:103817800-103825200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
44	chr7:103818000-103823800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr7:103818000-103824200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
46	chr7:103818000-103824400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
47	chr7:103818200-103829200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr7:103818400-103824000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
49	chr7:103818600-103832400	Strong transcription	Liver	Liver
50	chr7:103818600-103839600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links