Variant report

Variant	rs6978755
Chromosome Location	chr7:103690089-103690090
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10225526	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10246098	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10254126	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10276148	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1035169	0.83[JPT][hapmap]
rs10808128	0.83[JPT][hapmap]
rs10953408	0.83[JPT][hapmap]
rs12056191	0.83[JPT][hapmap]
rs12705173	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12705180	0.84[JPT][hapmap]
rs12705187	0.84[JPT][hapmap]
rs12705190	0.83[JPT][hapmap]
rs13233398	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13238183	0.83[JPT][hapmap]
rs194837	0.83[JPT][hapmap]
rs194841	0.83[JPT][hapmap]
rs194846	0.83[JPT][hapmap]
rs194847	0.83[JPT][hapmap]
rs194849	0.83[JPT][hapmap]
rs194851	0.84[CHB][hapmap];0.83[JPT][hapmap]
rs194857	0.83[JPT][hapmap]
rs194858	0.88[JPT][hapmap]
rs194861	0.83[JPT][hapmap]
rs194865	0.84[JPT][hapmap]
rs194867	0.83[JPT][hapmap]
rs194868	0.83[JPT][hapmap]
rs2160397	0.82[JPT][hapmap]
rs2245659	0.83[JPT][hapmap]
rs2299408	0.83[JPT][hapmap]
rs2299411	0.84[JPT][hapmap]
rs3779518	0.83[JPT][hapmap]
rs3808008	0.83[JPT][hapmap]
rs4265123	0.82[JPT][hapmap]
rs4333524	1.00[YRI][hapmap]
rs4385393	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6465959	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6948583	0.83[JPT][hapmap]
rs6961262	0.84[JPT][hapmap]
rs7780591	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7797463	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888924	chr7:103637906-103706936	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1018253	chr7:103669491-103731850	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103688600-103690200	Enhancers	HepG2	liver
2	chr7:103690000-103690400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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