Variant report

Variant	rs4301808
Chromosome Location	chr11:84597628-84597629
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TMEM126B-4	chr11:84595375-84600529	NONHSAT023429

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10082623	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10898308	0.94[CHB][hapmap];0.94[JPT][hapmap];0.81[YRI][hapmap]
rs10898310	0.82[CHB][hapmap];0.82[ASN][1000 genomes]
rs10898313	0.88[CHB][hapmap];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10898314	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10898315	0.94[CHB][hapmap];1.00[CHD][hapmap];0.85[MEX][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11234203	0.94[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.90[MEX][hapmap];0.81[YRI][hapmap]
rs11234221	0.82[CHB][hapmap];0.81[CHD][hapmap]
rs11234222	0.82[CHB][hapmap];0.94[CHD][hapmap]
rs11234225	0.94[CHB][hapmap];1.00[CHD][hapmap];0.85[MEX][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11234226	0.94[CHB][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1227671	0.86[YRI][hapmap]
rs17206745	0.81[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs17206780	0.85[CHD][hapmap]
rs1943712	0.88[CHB][hapmap]
rs1943714	0.88[CHB][hapmap];0.94[CHD][hapmap]
rs1943715	0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1943725	0.88[LWK][hapmap]
rs1943726	0.94[CHB][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1943727	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1943728	1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1943729	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1943732	0.94[CHB][hapmap];0.88[ASN][1000 genomes]
rs2226856	0.94[CHB][hapmap];0.88[CHD][hapmap];0.84[JPT][hapmap];0.81[MEX][hapmap];0.81[ASN][1000 genomes]
rs4144289	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4375458	0.82[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4457780	1.00[CEU][hapmap];0.94[CHB][hapmap];0.88[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.88[LWK][hapmap];0.90[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4486658	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4529903	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4529904	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4944498	0.88[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6592211	0.94[CHD][hapmap];0.84[ASN][1000 genomes]
rs7113831	0.88[CHB][hapmap];0.94[CHD][hapmap]
rs73516967	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1045974	chr11:84187214-84708462	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1048051	chr11:84419442-84784233	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv541109	chr11:84419442-84784233	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv817205	chr11:84497319-84628963	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv898040	chr11:84524697-84600597	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv555625	chr11:84547441-84629013	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84593600-84605400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:84597000-84598000	Enhancers	NHDF-Ad	bronchial
3	chr11:84597000-84598800	Enhancers	HSMMtube	muscle
4	chr11:84597200-84598000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:84597200-84598600	Enhancers	HSMM	muscle
6	chr11:84597600-84597800	Enhancers	Colon Smooth Muscle	Colon
7	chr11:84597600-84598000	Flanking Active TSS	Fetal Heart	heart
8	chr11:84597600-84598000	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr11:84597600-84598000	Enhancers	Osteobl	bone
10	chr11:84597600-84598400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr11:84597600-84598600	Enhancers	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links