Variant report

Variant	rs4457780
Chromosome Location	chr11:84600729-84600730
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TMEM126B-4	chr11:84600536-84604026	NONHSAT023429

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10082623	0.83[ASN][1000 genomes]
rs10898308	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs10898313	0.81[CHB][hapmap];0.83[ASN][1000 genomes]
rs10898314	0.83[ASN][1000 genomes]
rs10898315	0.88[CHB][hapmap];0.88[CHD][hapmap];0.84[ASN][1000 genomes]
rs11234203	0.88[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap]
rs11234222	0.88[CHD][hapmap]
rs11234225	0.88[CHB][hapmap];0.88[CHD][hapmap];0.84[ASN][1000 genomes]
rs11234226	0.87[CHB][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17206745	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs1943712	0.81[CHB][hapmap]
rs1943714	0.81[CHB][hapmap];0.91[CHD][hapmap]
rs1943715	0.88[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1943725	0.93[LWK][hapmap];0.88[YRI][hapmap]
rs1943726	0.88[CHB][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1943727	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1943728	0.93[CHB][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1943729	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1943732	0.87[CHB][hapmap];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2226856	0.88[CHB][hapmap]
rs4144289	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4301808	1.00[CEU][hapmap];0.94[CHB][hapmap];0.88[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.88[LWK][hapmap];0.90[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4375458	1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4486658	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4529903	0.85[ASN][1000 genomes]
rs4529904	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4944498	0.81[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6592211	0.88[CHD][hapmap];0.84[ASN][1000 genomes]
rs7113831	0.81[CHB][hapmap];0.88[CHD][hapmap]
rs73516967	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1045974	chr11:84187214-84708462	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1048051	chr11:84419442-84784233	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv541109	chr11:84419442-84784233	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv817205	chr11:84497319-84628963	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv555625	chr11:84547441-84629013	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84593600-84605400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:84598600-84601600	Weak transcription	Fetal Heart	heart
3	chr11:84598800-84601600	Weak transcription	HSMMtube	muscle
4	chr11:84600400-84601000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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