Variant report
| Variant | rs4302821 |
|---|---|
| Chromosome Location | chr8:78195545-78195546 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:4)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:4 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | MAFK | chr8:78195323-78195629 | HepG2 | liver: | n/a | n/a |
| 2 | MAFK | chr8:78195344-78195634 | HepG2 | liver: | n/a | n/a |
| 3 | MAFF | chr8:78195322-78195625 | HepG2 | liver: | n/a | chr8:78195474-78195492 |
| 4 | MAFK | chr8:78195334-78195625 | IMR90 | lung: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000222334 | TF binding region |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs10096363 | 0.92[ASN][1000 genomes] |
| rs10111141 | 0.82[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10957848 | 0.92[ASN][1000 genomes] |
| rs11996965 | 0.82[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12549538 | 0.86[AMR][1000 genomes] |
| rs13253347 | 0.92[ASN][1000 genomes] |
| rs13255097 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4272350 | 0.88[ASN][1000 genomes] |
| rs4329252 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs4469432 | 0.82[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4472487 | 0.89[ASN][1000 genomes] |
| rs4496944 | 0.92[ASN][1000 genomes] |
| rs4526336 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs6473021 | 1.00[ASN][1000 genomes] |
| rs6473022 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs6998601 | 0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7816753 | 0.82[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7833915 | 0.92[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv891045 | chr8:77998659-78477561 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv611566 | chr8:78126326-78245535 | Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv427822 | chr8:78132650-78245590 | Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
