Variant report

Variant	rs4329252
Chromosome Location	chr8:78198334-78198335
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10096363	0.92[ASN][1000 genomes]
rs10111141	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10957848	0.92[ASN][1000 genomes]
rs11996965	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12549538	0.85[AMR][1000 genomes]
rs13253347	0.92[ASN][1000 genomes]
rs13255097	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4272350	0.88[ASN][1000 genomes]
rs4302821	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4469432	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4472487	0.89[ASN][1000 genomes]
rs4496944	0.92[ASN][1000 genomes]
rs4526336	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs6473021	1.00[ASN][1000 genomes]
rs6473022	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap]
rs6998601	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7816753	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7833915	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891045	chr8:77998659-78477561	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv611566	chr8:78126326-78245535	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv427822	chr8:78132650-78245590	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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