Variant report

Variant	rs4302887
Chromosome Location	chr8:90313757-90313758
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:90313557..90316348-chr8:90316997..90319764,3	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10086145	0.81[ASN][1000 genomes]
rs10102049	0.82[ASN][1000 genomes]
rs10107649	0.85[ASN][1000 genomes]
rs1011271	0.81[EUR][1000 genomes]
rs10504876	0.83[ASN][1000 genomes]
rs11785662	0.81[EUR][1000 genomes]
rs12549342	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13262086	0.80[ASN][1000 genomes]
rs13278618	0.82[ASN][1000 genomes]
rs13279324	0.82[ASN][1000 genomes]
rs1383035	0.83[ASN][1000 genomes]
rs1383036	0.81[EUR][1000 genomes]
rs1383037	0.81[EUR][1000 genomes]
rs1479898	0.82[ASN][1000 genomes]
rs1600505	0.80[ASN][1000 genomes]
rs1824967	0.82[ASN][1000 genomes]
rs1842297	0.83[ASN][1000 genomes]
rs2068088	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2198094	0.82[ASN][1000 genomes]
rs2219864	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2338697	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2879240	0.82[EUR][1000 genomes]
rs35369616	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35981062	0.81[EUR][1000 genomes]
rs4246119	0.86[ASN][1000 genomes]
rs4268168	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4291311	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4380986	0.82[EUR][1000 genomes]
rs4493948	0.82[EUR][1000 genomes]
rs4509384	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4588905	0.81[EUR][1000 genomes]
rs4960969	0.81[EUR][1000 genomes]
rs4961128	0.86[ASN][1000 genomes]
rs4961129	0.86[ASN][1000 genomes]
rs6469976	0.80[EUR][1000 genomes]
rs6989492	0.81[EUR][1000 genomes]
rs6990609	0.81[EUR][1000 genomes]
rs7012184	0.81[EUR][1000 genomes]
rs7014069	0.81[EUR][1000 genomes]
rs7817287	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7818117	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7818636	0.82[ASN][1000 genomes]
rs7820067	0.81[EUR][1000 genomes]
rs7821252	0.83[ASN][1000 genomes]
rs7837196	0.81[ASN][1000 genomes]
rs7837625	0.82[ASN][1000 genomes]
rs7840648	0.81[EUR][1000 genomes]
rs989108	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465735	chr8:89760311-90729507	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv611714	chr8:89760311-90729507	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1024956	chr8:90104423-90459539	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv539671	chr8:90104423-90459539	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1032886	chr8:90253748-90398240	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
6	nsv891178	chr8:90289326-90337010	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv891179	chr8:90307652-90335826	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90313400-90314400	Weak transcription	Dnd41	blood

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