Variant report

Variant	rs4305737
Chromosome Location	chr6:145051594-145051595
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11155373	0.89[CEU][hapmap]
rs11969314	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13219714	0.89[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1406045	0.89[JPT][hapmap]
rs1590054	0.89[JPT][hapmap]
rs1969517	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2328571	0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4131500	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4243473	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4243474	0.89[CEU][hapmap];0.83[CHD][hapmap]
rs4272231	0.89[CEU][hapmap];0.83[CHD][hapmap]
rs4295503	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4360150	0.89[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4385333	0.89[CEU][hapmap]
rs4446580	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4463276	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4479957	1.00[ASW][hapmap];0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4538733	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4571589	0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4896738	0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4896740	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.92[TSI][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6570644	0.92[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6901197	0.89[ASW][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6905526	0.83[CEU][hapmap];0.87[MEX][hapmap]
rs6906020	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6906948	0.92[CHB][hapmap];0.92[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6927442	0.94[CEU][hapmap];0.85[TSI][hapmap]
rs7742259	0.89[CEU][hapmap]
rs7750326	0.89[ASW][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.82[YRI][hapmap];0.92[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7756909	0.92[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.86[TSI][hapmap];0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7758369	0.88[CEU][hapmap]
rs7758449	0.89[JPT][hapmap]
rs9283116	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9285504	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9321988	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9321990	1.00[ASW][hapmap];0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9373425	0.92[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9390197	0.89[JPT][hapmap]
rs9390201	0.92[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9390208	1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.92[TSI][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9403587	0.89[JPT][hapmap]
rs9403593	0.85[EUR][1000 genomes]
rs9791320	0.94[CEU][hapmap];0.85[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1032838	chr6:144978504-145110121	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830833	chr6:145001310-145201143	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv1021098	chr6:145017386-145106441	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144996600-145052400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr6:145011000-145052600	Weak transcription	Ovary	ovary
3	chr6:145011800-145065600	Weak transcription	Pancreas	Pancrea
4	chr6:145011800-145090200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr6:145011800-145096600	Weak transcription	Thymus	Thymus
6	chr6:145012000-145055600	Weak transcription	Spleen	Spleen
7	chr6:145012400-145053000	Weak transcription	Fetal Stomach	stomach
8	chr6:145018200-145052400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr6:145018400-145069000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:145019400-145052600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr6:145022200-145053000	Weak transcription	Fetal Intestine Small	intestine
12	chr6:145024000-145087200	Weak transcription	Psoas Muscle	Psoas
13	chr6:145027400-145052400	Weak transcription	Liver	Liver
14	chr6:145030200-145052400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:145030200-145052600	Weak transcription	Aorta	Aorta
16	chr6:145030200-145052600	Weak transcription	Fetal Intestine Large	intestine
17	chr6:145035800-145052600	Weak transcription	Fetal Lung	lung
18	chr6:145037200-145052400	Weak transcription	HUVEC	blood vessel
19	chr6:145038600-145052200	Weak transcription	Adipose Nuclei	Adipose
20	chr6:145038600-145062200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr6:145039600-145052200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:145039800-145052400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:145040000-145052400	Weak transcription	NHDF-Ad	bronchial
24	chr6:145040000-145094600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr6:145040000-145114600	Weak transcription	NHLF	lung
26	chr6:145040200-145052200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:145040200-145052600	Weak transcription	Left Ventricle	heart
28	chr6:145041600-145052400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr6:145041800-145052400	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr6:145041800-145052600	Weak transcription	Fetal Muscle Leg	muscle
31	chr6:145042600-145052600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr6:145043400-145056000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr6:145044000-145052200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr6:145044000-145052800	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr6:145044200-145069400	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr6:145046000-145122200	Weak transcription	Colonic Mucosa	Colon
37	chr6:145047200-145077400	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr6:145047400-145065800	Weak transcription	Stomach Mucosa	stomach
39	chr6:145047600-145052400	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr6:145047600-145052400	Weak transcription	NH-A	brain
41	chr6:145047600-145052600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr6:145047600-145053000	Weak transcription	Lung	lung
43	chr6:145047600-145056000	Weak transcription	Stomach Smooth Muscle	stomach
44	chr6:145047600-145057800	Weak transcription	Brain Substantia Nigra	brain
45	chr6:145047600-145065800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr6:145047600-145065800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr6:145047600-145065800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr6:145047600-145075000	Weak transcription	Gastric	stomach
49	chr6:145047600-145083400	Weak transcription	Right Ventricle	heart
50	chr6:145047600-145096600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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