Variant report

Variant	rs7756909
Chromosome Location	chr6:145069287-145069288
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:145061427..145064172-chr6:145068837..145070432,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11969314	0.91[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13219714	0.81[CEU][hapmap];0.93[AMR][1000 genomes]
rs1406045	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs1590054	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs1969517	0.86[AMR][1000 genomes]
rs2066054	0.87[ASW][hapmap]
rs2328571	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes]
rs4131500	0.91[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4243473	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4243474	0.85[CHB][hapmap];0.83[CHD][hapmap];0.81[AMR][1000 genomes]
rs4272231	0.85[CHB][hapmap];0.83[CHD][hapmap]
rs4295503	0.91[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4305737	0.92[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.86[TSI][hapmap];0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4360150	0.81[CEU][hapmap];0.93[AMR][1000 genomes]
rs4385333	0.85[CHB][hapmap];0.81[AMR][1000 genomes]
rs4446580	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4463276	0.92[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.86[TSI][hapmap];0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4479957	0.91[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4538733	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4571589	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895657	0.87[ASW][hapmap];0.80[MEX][hapmap]
rs4896738	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes]
rs4896740	0.91[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6570644	1.00[ASW][hapmap];0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.95[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6901197	0.89[ASW][hapmap];0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6906020	0.91[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6906948	1.00[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.85[AMR][1000 genomes]
rs7742259	0.81[AMR][1000 genomes]
rs7744222	0.87[ASW][hapmap]
rs7750326	0.89[ASW][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.84[TSI][hapmap];0.84[AMR][1000 genomes]
rs7758369	0.84[CHB][hapmap]
rs7758449	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs9283116	0.90[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9285504	0.91[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9321988	0.85[AMR][1000 genomes]
rs9321990	0.91[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9373425	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes]
rs9390197	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs9390201	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap]
rs9390208	0.86[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9403587	0.83[CHB][hapmap];0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1032838	chr6:144978504-145110121	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830833	chr6:145001310-145201143	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv1021098	chr6:145017386-145106441	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145011800-145090200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr6:145011800-145096600	Weak transcription	Thymus	Thymus
3	chr6:145024000-145087200	Weak transcription	Psoas Muscle	Psoas
4	chr6:145040000-145094600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:145040000-145114600	Weak transcription	NHLF	lung
6	chr6:145044200-145069400	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr6:145046000-145122200	Weak transcription	Colonic Mucosa	Colon
8	chr6:145047200-145077400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr6:145047600-145075000	Weak transcription	Gastric	stomach
10	chr6:145047600-145083400	Weak transcription	Right Ventricle	heart
11	chr6:145047600-145096600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:145047600-145115000	Weak transcription	Esophagus	oesophagus
13	chr6:145047600-145115000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr6:145047800-145079600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:145047800-145079600	Weak transcription	NHEK	skin
16	chr6:145049400-145098400	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr6:145049600-145088800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr6:145051800-145072200	Weak transcription	Osteobl	bone
19	chr6:145053000-145070000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr6:145053000-145072800	Weak transcription	NHDF-Ad	bronchial
21	chr6:145053000-145079800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:145053200-145073800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr6:145053400-145069400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr6:145054000-145072600	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr6:145054000-145095600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr6:145054200-145069400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:145054200-145072600	Weak transcription	HUVEC	blood vessel
28	chr6:145054200-145072800	Weak transcription	Ovary	ovary
29	chr6:145054200-145093400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr6:145054400-145069600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr6:145054400-145100000	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr6:145055000-145069400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr6:145055400-145069400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr6:145055400-145069400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr6:145056000-145069400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr6:145056000-145072600	Weak transcription	GM12878-XiMat	blood
37	chr6:145056200-145069600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr6:145056400-145072600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr6:145056400-145072800	Weak transcription	Fetal Muscle Trunk	muscle
40	chr6:145056600-145072800	Weak transcription	Fetal Muscle Leg	muscle
41	chr6:145056600-145078600	Weak transcription	Duodenum Mucosa	Duodenum
42	chr6:145058400-145072000	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr6:145059600-145069400	Weak transcription	Adipose Nuclei	Adipose
44	chr6:145059600-145072000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr6:145059600-145096600	Weak transcription	Lung	lung
46	chr6:145059600-145097400	Weak transcription	Spleen	Spleen
47	chr6:145059800-145070200	Weak transcription	Primary T cells from cord blood	blood
48	chr6:145059800-145096600	Weak transcription	Fetal Stomach	stomach
49	chr6:145061400-145069400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr6:145063400-145073600	Weak transcription	Fetal Heart	heart

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