Variant report

Variant	rs4895657
Chromosome Location	chr6:145162001-145162002
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1338706	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1338707	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1416299	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2066054	1.00[ASW][hapmap];1.00[CHB][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2095803	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2153112	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4431458	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4431459	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4557541	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4568474	0.80[AMR][1000 genomes]
rs4896754	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896755	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896756	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896758	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896759	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6420778	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6570644	0.87[ASW][hapmap];0.86[MEX][hapmap]
rs6570647	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6570649	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6570650	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6570651	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6570653	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6570654	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6901197	0.86[MEX][hapmap]
rs6906472	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6906822	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6939038	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71543299	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7744950	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7744985	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7746092	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7756909	0.87[ASW][hapmap];0.80[MEX][hapmap]
rs7767330	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9321997	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9373430	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9373432	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376862	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376865	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386087	0.82[AMR][1000 genomes]
rs9399511	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9399512	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9403618	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv830833	chr6:145001310-145201143	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv886740	chr6:145105354-145199259	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv886741	chr6:145123326-145165362	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145099600-145165800	Weak transcription	Small Intestine	intestine
2	chr6:145116400-145169000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr6:145117400-145175200	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr6:145126600-145169400	Weak transcription	Stomach Mucosa	stomach
5	chr6:145130600-145163800	Weak transcription	NHEK	skin
6	chr6:145130800-145172200	Weak transcription	NH-A	brain
7	chr6:145135400-145166000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:145137400-145176800	Weak transcription	Fetal Heart	heart
9	chr6:145137800-145175800	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr6:145141400-145172000	Weak transcription	Brain Substantia Nigra	brain
11	chr6:145141400-145175200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr6:145142000-145171400	Weak transcription	HMEC	breast
13	chr6:145143000-145173600	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr6:145145400-145167400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr6:145146400-145167400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr6:145150000-145162200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:145150800-145167800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr6:145151800-145164200	Strong transcription	Primary T cells from cord blood	blood
19	chr6:145152800-145162400	Strong transcription	Rectal Mucosa Donor 31	rectum
20	chr6:145154200-145164400	Strong transcription	Liver	Liver
21	chr6:145154200-145175200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr6:145154400-145162200	Strong transcription	Primary T killer memory cells from peripheral blood	blood
23	chr6:145154400-145162600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr6:145154400-145165200	Strong transcription	Adipose Nuclei	Adipose
25	chr6:145154400-145173400	Strong transcription	Primary B cells from peripheral blood	blood
26	chr6:145154400-145175000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr6:145154400-145175200	Strong transcription	Dnd41	blood
28	chr6:145154800-145162400	Strong transcription	Sigmoid Colon	Sigmoid Colon
29	chr6:145154800-145162600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr6:145154800-145163800	Strong transcription	Fetal Muscle Leg	muscle
31	chr6:145154800-145163800	Strong transcription	HepG2	liver
32	chr6:145154800-145164600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr6:145154800-145165800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr6:145154800-145166000	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr6:145154800-145169200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:145154800-145175200	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr6:145155000-145162200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
38	chr6:145155000-145162400	Strong transcription	Colonic Mucosa	Colon
39	chr6:145155000-145162600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr6:145155000-145162600	Strong transcription	Fetal Thymus	thymus
41	chr6:145155000-145162800	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr6:145155000-145162800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr6:145155400-145164400	Strong transcription	HUES48 Cell Line	embryonic stem cell
44	chr6:145155400-145166000	Strong transcription	Left Ventricle	heart
45	chr6:145155600-145162600	Strong transcription	Skeletal Muscle Female	skeletal muscle
46	chr6:145155600-145162600	Strong transcription	Stomach Smooth Muscle	stomach
47	chr6:145155600-145163000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr6:145155600-145163200	Strong transcription	Ovary	ovary
49	chr6:145155600-145164000	Strong transcription	Fetal Muscle Trunk	muscle
50	chr6:145155800-145162400	Strong transcription	Primary neutrophils fromperipheralblood	blood

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