Variant report

Variant	rs9376862
Chromosome Location	chr6:145155441-145155442
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:145154339..145157220-chr6:145158653..145160590,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152818	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1338706	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1338707	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1416299	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2066054	0.88[ASN][1000 genomes]
rs2095803	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2153112	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4431458	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4431459	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4557541	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4568474	0.84[AMR][1000 genomes]
rs4895657	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895659	0.81[AMR][1000 genomes]
rs4896754	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896755	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896756	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896758	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896759	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6420778	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6570647	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6570649	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6570650	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6570651	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6570653	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6570654	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6906472	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6906822	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6939038	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71543299	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7744950	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7744985	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7746092	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7767330	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9321996	0.80[AMR][1000 genomes]
rs9321997	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9373430	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9373432	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376865	0.94[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386087	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs9390238	0.81[AMR][1000 genomes]
rs9399511	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9399512	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9403618	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv830833	chr6:145001310-145201143	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv886740	chr6:145105354-145199259	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv886741	chr6:145123326-145165362	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145084000-145155800	Weak transcription	Right Ventricle	heart
2	chr6:145099600-145165800	Weak transcription	Small Intestine	intestine
3	chr6:145115800-145156600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:145116000-145155800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr6:145116400-145155600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr6:145116400-145169000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:145117400-145175200	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr6:145119200-145155800	Weak transcription	Pancreas	Pancrea
9	chr6:145120200-145156400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr6:145120800-145155800	Weak transcription	Thymus	Thymus
11	chr6:145126600-145169400	Weak transcription	Stomach Mucosa	stomach
12	chr6:145130600-145163800	Weak transcription	NHEK	skin
13	chr6:145130800-145156800	Weak transcription	Osteobl	bone
14	chr6:145130800-145172200	Weak transcription	NH-A	brain
15	chr6:145131000-145156600	Weak transcription	NHLF	lung
16	chr6:145131000-145157000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:145132800-145155600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr6:145135400-145166000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:145135600-145155800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:145135600-145156800	Weak transcription	Lung	lung
21	chr6:145135600-145157600	Weak transcription	GM12878-XiMat	blood
22	chr6:145137400-145157000	Weak transcription	Psoas Muscle	Psoas
23	chr6:145137400-145176800	Weak transcription	Fetal Heart	heart
24	chr6:145137800-145175800	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr6:145140200-145157000	Weak transcription	Brain Hippocampus Middle	brain
26	chr6:145140200-145161600	Strong transcription	Primary B cells from cord blood	blood
27	chr6:145141400-145172000	Weak transcription	Brain Substantia Nigra	brain
28	chr6:145141400-145175200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr6:145142000-145171400	Weak transcription	HMEC	breast
30	chr6:145142400-145156400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr6:145143000-145173600	Strong transcription	Primary T cells fromperipheralblood	blood
32	chr6:145145200-145157200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr6:145145400-145157000	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr6:145145400-145157400	Weak transcription	Fetal Kidney	kidney
35	chr6:145145400-145157600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr6:145145400-145157600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr6:145145400-145158800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr6:145145400-145167400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr6:145146400-145155800	Weak transcription	Fetal Intestine Small	intestine
40	chr6:145146400-145167400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr6:145146800-145155600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr6:145147800-145155800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr6:145148000-145162000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr6:145148400-145157200	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr6:145149600-145157200	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr6:145149600-145157200	Weak transcription	Placenta	Placenta
47	chr6:145149800-145155600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr6:145149800-145155800	Weak transcription	Duodenum Mucosa	Duodenum
49	chr6:145150000-145155600	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr6:145150000-145155800	Weak transcription	Primary T helper cells PMA-I stimulated	--

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