Variant report

Variant	rs9321996
Chromosome Location	chr6:145177712-145177713
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:145169081..145170847-chr6:145177041..145178659,2	MCF-7	breast:
2	chr6:145177565..145179136-chr6:145179298..145181387,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1338706	0.82[AMR][1000 genomes]
rs1338707	0.82[AMR][1000 genomes]
rs1416299	0.82[AMR][1000 genomes]
rs2095803	0.80[AMR][1000 genomes]
rs2153112	0.82[AMR][1000 genomes]
rs4431458	0.84[AMR][1000 genomes]
rs4431459	0.82[AMR][1000 genomes]
rs4895659	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4896754	0.82[AMR][1000 genomes]
rs4896755	0.81[AMR][1000 genomes]
rs4896756	0.82[AMR][1000 genomes]
rs4896758	0.82[AMR][1000 genomes]
rs4896759	0.82[AMR][1000 genomes]
rs6420778	0.81[AMR][1000 genomes]
rs6570649	0.82[AMR][1000 genomes]
rs6570650	0.82[AMR][1000 genomes]
rs6570651	0.82[AMR][1000 genomes]
rs6570653	0.82[AMR][1000 genomes]
rs6906472	0.80[AMR][1000 genomes]
rs6906822	0.85[AMR][1000 genomes]
rs6939038	0.81[AMR][1000 genomes]
rs7744950	0.82[AMR][1000 genomes]
rs7744985	0.82[AMR][1000 genomes]
rs7746092	0.82[AMR][1000 genomes]
rs9321997	0.82[AMR][1000 genomes]
rs9373432	0.82[AMR][1000 genomes]
rs9376862	0.80[AMR][1000 genomes]
rs9386087	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9390238	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9390241	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9399511	0.82[AMR][1000 genomes]
rs9399512	0.82[AMR][1000 genomes]
rs9403618	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv830833	chr6:145001310-145201143	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv886740	chr6:145105354-145199259	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145161000-145179000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr6:145167400-145188000	Weak transcription	NHDF-Ad	bronchial
3	chr6:145169400-145189400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:145172400-145178800	Weak transcription	Lung	lung
5	chr6:145173400-145177800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:145173400-145178600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr6:145173600-145178000	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr6:145175200-145177800	Weak transcription	Primary T cells from cord blood	blood
9	chr6:145175200-145178000	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr6:145175200-145178400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr6:145175200-145178800	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr6:145175200-145178800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:145175800-145177800	Weak transcription	Primary B cells from cord blood	blood
14	chr6:145175800-145178400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:145175800-145178600	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr6:145176000-145178600	Weak transcription	Left Ventricle	heart
17	chr6:145176200-145178800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:145177400-145192200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links