Variant report
| Variant | rs4895659 |
|---|---|
| Chromosome Location | chr6:145179428-145179429 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:145177565..145179136-chr6:145179298..145181387,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs1338706 | 0.83[AMR][1000 genomes] |
| rs1338707 | 0.83[AMR][1000 genomes] |
| rs1416299 | 0.83[AMR][1000 genomes] |
| rs2066054 | 1.00[JPT][hapmap] |
| rs2095803 | 0.81[AMR][1000 genomes] |
| rs2153112 | 0.83[AMR][1000 genomes] |
| rs4431458 | 0.85[AMR][1000 genomes] |
| rs4431459 | 0.83[AMR][1000 genomes] |
| rs4895657 | 1.00[JPT][hapmap] |
| rs4896754 | 0.83[AMR][1000 genomes] |
| rs4896755 | 0.82[AMR][1000 genomes] |
| rs4896756 | 0.83[AMR][1000 genomes] |
| rs4896758 | 0.83[AMR][1000 genomes] |
| rs4896759 | 0.83[AMR][1000 genomes] |
| rs6420778 | 0.82[AMR][1000 genomes] |
| rs6570649 | 0.83[AMR][1000 genomes] |
| rs6570650 | 0.83[AMR][1000 genomes] |
| rs6570651 | 0.83[AMR][1000 genomes] |
| rs6570653 | 0.83[AMR][1000 genomes] |
| rs6906472 | 0.81[AMR][1000 genomes] |
| rs6906822 | 0.86[AMR][1000 genomes] |
| rs6939038 | 0.82[AMR][1000 genomes] |
| rs7744950 | 0.83[AMR][1000 genomes] |
| rs7744985 | 0.83[AMR][1000 genomes] |
| rs7746092 | 0.83[AMR][1000 genomes] |
| rs9321996 | 0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9321997 | 0.83[AMR][1000 genomes] |
| rs9373430 | 1.00[JPT][hapmap] |
| rs9373432 | 0.83[AMR][1000 genomes] |
| rs9376862 | 0.81[AMR][1000 genomes] |
| rs9376865 | 1.00[JPT][hapmap] |
| rs9386087 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9390238 | 0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9390241 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs9399511 | 0.83[AMR][1000 genomes] |
| rs9399512 | 0.83[AMR][1000 genomes] |
| rs9403618 | 0.96[AFR][1000 genomes];0.84[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1016747 | chr6:144917411-145599874 | Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv830833 | chr6:145001310-145201143 | Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv886740 | chr6:145105354-145199259 | Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:145167400-145188000 | Weak transcription | NHDF-Ad | bronchial |
| 2 | chr6:145169400-145189400 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
| 3 | chr6:145177400-145192200 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
