Variant report

Variant	rs4311289
Chromosome Location	chr20:41459864-41459865
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11099727	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12374208	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12374271	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17624426	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17686333	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs56112611	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs725653	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72721883	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72721885	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72721895	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72724014	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72724016	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs72724017	0.86[ASN][1000 genomes]
rs72724018	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs72724021	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs72724022	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs72724023	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs72724025	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72724036	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915994	chr20:41180550-41464507	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1058990	chr20:41289969-41543912	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv544277	chr20:41289969-41543912	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1063450	chr20:41409901-41880620	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1060690	chr20:41413369-41851935	Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1066088	chr20:41417205-42060036	Enhancers Bivalent Enhancer Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:41457800-41464400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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