Variant report

Variant	rs431856
Chromosome Location	chr18:39921147-39921148
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1036836	0.86[EUR][1000 genomes]
rs1156541	0.81[EUR][1000 genomes]
rs1156542	0.85[EUR][1000 genomes]
rs1372762	0.86[EUR][1000 genomes]
rs1372763	0.86[EUR][1000 genomes]
rs168300	0.84[EUR][1000 genomes]
rs173196	0.93[EUR][1000 genomes]
rs173199	0.87[EUR][1000 genomes]
rs180830	0.84[EUR][1000 genomes]
rs180831	0.84[EUR][1000 genomes]
rs180832	0.86[EUR][1000 genomes]
rs189389	0.84[EUR][1000 genomes]
rs189390	0.86[EUR][1000 genomes]
rs2336238	0.83[EUR][1000 genomes]
rs2584798	0.84[EUR][1000 genomes]
rs28760399	0.86[EUR][1000 genomes]
rs346182	0.84[EUR][1000 genomes]
rs346185	0.84[EUR][1000 genomes]
rs346186	0.84[EUR][1000 genomes]
rs346187	0.84[EUR][1000 genomes]
rs346188	0.84[EUR][1000 genomes]
rs346189	0.84[EUR][1000 genomes]
rs346191	0.84[EUR][1000 genomes]
rs346193	0.83[EUR][1000 genomes]
rs346196	0.84[EUR][1000 genomes]
rs346212	0.84[EUR][1000 genomes]
rs346213	0.84[EUR][1000 genomes]
rs346214	0.84[EUR][1000 genomes]
rs346215	0.82[EUR][1000 genomes]
rs346217	0.80[EUR][1000 genomes]
rs346222	0.84[EUR][1000 genomes]
rs346223	0.84[EUR][1000 genomes]
rs346261	0.83[EUR][1000 genomes]
rs346263	0.84[EUR][1000 genomes]
rs346264	0.84[EUR][1000 genomes]
rs346265	0.84[EUR][1000 genomes]
rs346266	0.84[EUR][1000 genomes]
rs346267	0.84[EUR][1000 genomes]
rs346268	0.84[EUR][1000 genomes]
rs346269	0.93[EUR][1000 genomes]
rs346270	0.84[EUR][1000 genomes]
rs346271	0.86[EUR][1000 genomes]
rs346438	0.83[EUR][1000 genomes]
rs346439	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs346441	0.95[EUR][1000 genomes]
rs346442	0.84[EUR][1000 genomes]
rs346443	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs346444	0.84[EUR][1000 genomes]
rs35385168	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs410555	0.82[EUR][1000 genomes]
rs417913	0.93[EUR][1000 genomes]
rs437300	0.81[EUR][1000 genomes]
rs437823	0.93[EUR][1000 genomes]
rs445364	0.84[EUR][1000 genomes]
rs59046070	0.80[AFR][1000 genomes]
rs59980203	0.85[AFR][1000 genomes]
rs61067214	0.80[AFR][1000 genomes]
rs675137	0.84[EUR][1000 genomes]
rs7226753	0.82[EUR][1000 genomes]
rs7229024	0.80[AFR][1000 genomes]
rs7239965	0.85[EUR][1000 genomes]
rs7241409	0.85[EUR][1000 genomes]
rs72903133	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72903135	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73951515	0.81[AFR][1000 genomes]
rs971293	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949609	chr18:39126941-40070286	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1059409	chr18:39711099-40139446	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:39916400-39921400	Enhancers	Liver	Liver
2	chr18:39916800-39922200	Enhancers	HepG2	liver
3	chr18:39917000-39923000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr18:39917200-39922000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr18:39918400-39921400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr18:39919800-39921200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr18:39920200-39921600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr18:39920200-39922000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr18:39920200-39923400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr18:39920800-39922200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr18:39920800-39922800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr18:39921000-39921200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr18:39921000-39922000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr18:39921000-39922200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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