Variant report

Variant	rs72903133
Chromosome Location	chr18:39917501-39917502
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs1036836	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1156542	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1372762	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1372763	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1431834	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs168300	0.84[EUR][1000 genomes]
rs173196	0.84[EUR][1000 genomes]
rs173199	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs180830	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs180831	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs180832	0.94[EUR][1000 genomes]
rs189389	0.91[EUR][1000 genomes]
rs189390	0.94[EUR][1000 genomes]
rs2336238	0.88[EUR][1000 genomes]
rs237970	0.87[EUR][1000 genomes]
rs2584798	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs28760399	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs346182	0.84[EUR][1000 genomes]
rs346183	0.87[EUR][1000 genomes]
rs346184	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs346185	0.84[EUR][1000 genomes]
rs346186	0.84[EUR][1000 genomes]
rs346187	0.84[EUR][1000 genomes]
rs346188	0.84[EUR][1000 genomes]
rs346189	0.84[EUR][1000 genomes]
rs346190	0.87[EUR][1000 genomes]
rs346191	0.84[EUR][1000 genomes]
rs346192	0.87[EUR][1000 genomes]
rs346193	0.83[EUR][1000 genomes]
rs346196	0.84[EUR][1000 genomes]
rs346197	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs346212	0.84[EUR][1000 genomes]
rs346213	0.84[EUR][1000 genomes]
rs346214	0.84[EUR][1000 genomes]
rs346215	0.82[EUR][1000 genomes]
rs346217	0.81[EUR][1000 genomes]
rs346222	0.84[EUR][1000 genomes]
rs346223	0.84[EUR][1000 genomes]
rs346224	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs346225	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs346261	0.91[EUR][1000 genomes]
rs346263	0.91[EUR][1000 genomes]
rs346264	0.91[EUR][1000 genomes]
rs346265	0.91[EUR][1000 genomes]
rs346266	0.91[EUR][1000 genomes]
rs346267	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs346268	0.91[EUR][1000 genomes]
rs346269	0.84[EUR][1000 genomes]
rs346270	0.91[EUR][1000 genomes]
rs346271	0.94[EUR][1000 genomes]
rs346438	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs346439	0.84[EUR][1000 genomes]
rs346441	0.87[EUR][1000 genomes]
rs346442	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs346443	0.86[EUR][1000 genomes]
rs346444	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs346447	0.83[EUR][1000 genomes]
rs34666938	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs400064	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs410555	0.90[EUR][1000 genomes]
rs417913	0.84[EUR][1000 genomes]
rs421138	0.82[EUR][1000 genomes]
rs431856	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs437300	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs437823	0.84[EUR][1000 genomes]
rs441362	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs445364	0.91[EUR][1000 genomes]
rs4533372	0.86[AFR][1000 genomes]
rs675137	0.91[EUR][1000 genomes]
rs7226753	0.90[EUR][1000 genomes]
rs7239965	0.93[EUR][1000 genomes]
rs7241409	0.93[EUR][1000 genomes]
rs72893596	0.86[AFR][1000 genomes]
rs72903135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs971293	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949609	chr18:39126941-40070286	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1059409	chr18:39711099-40139446	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:39915200-39917600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
2	chr18:39916400-39917800	ZNF genes & repeats	Fetal Intestine Small	intestine
3	chr18:39916400-39921400	Enhancers	Liver	Liver
4	chr18:39916600-39918000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
5	chr18:39916600-39918800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr18:39916800-39918000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr18:39916800-39918000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr18:39916800-39922200	Enhancers	HepG2	liver
9	chr18:39917000-39918000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
10	chr18:39917000-39923000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr18:39917200-39922000	Weak transcription	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links