Variant report

Variant	rs4319010
Chromosome Location	chr7:78081587-78081588
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10252237	0.87[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs10953565	0.85[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap];0.88[EUR][1000 genomes]
rs2110869	0.97[EUR][1000 genomes]
rs2110870	0.93[CEU][hapmap];0.97[EUR][1000 genomes]
rs2160319	0.93[CEU][hapmap];0.96[EUR][1000 genomes]
rs2302637	0.81[CHB][hapmap]
rs2885553	0.93[CEU][hapmap];0.97[EUR][1000 genomes]
rs4314593	0.93[CHB][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs4513910	0.93[CEU][hapmap];0.98[EUR][1000 genomes]
rs4623346	0.94[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs59424961	0.84[ASN][1000 genomes]
rs73148374	0.96[EUR][1000 genomes]
rs7790881	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs7792126	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs7794878	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78078600-78082400	Weak transcription	Brain Hippocampus Middle	brain
2	chr7:78078800-78082400	Weak transcription	Brain Substantia Nigra	brain
3	chr7:78079000-78082400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr7:78080200-78082400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr7:78080200-78082400	Weak transcription	Brain Anterior Caudate	brain
6	chr7:78080400-78082400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr7:78080600-78082000	Weak transcription	Brain Angular Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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