Variant report

Variant	rs59424961
Chromosome Location	chr7:78083716-78083717
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10485888	0.90[EUR][1000 genomes]
rs10953565	0.85[ASN][1000 genomes]
rs11486981	0.85[ASN][1000 genomes]
rs17150792	0.92[EUR][1000 genomes]
rs17150823	0.96[EUR][1000 genomes]
rs17353183	0.90[EUR][1000 genomes]
rs17431054	0.90[EUR][1000 genomes]
rs2302637	0.84[ASN][1000 genomes]
rs4314593	0.96[EUR][1000 genomes]
rs4319010	0.84[ASN][1000 genomes]
rs4623346	0.96[EUR][1000 genomes]
rs59417246	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6466222	0.86[ASN][1000 genomes]
rs73148383	0.95[EUR][1000 genomes]
rs73148390	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73148393	0.97[EUR][1000 genomes]
rs7779438	0.87[EUR][1000 genomes]
rs7790881	0.86[ASN][1000 genomes]
rs7792126	0.86[ASN][1000 genomes]
rs7798901	0.93[EUR][1000 genomes]
rs7801864	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78083000-78088600	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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