Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10237632	0.81[EUR][1000 genomes]
rs10260177	0.80[EUR][1000 genomes]
rs10270014	0.81[EUR][1000 genomes]
rs10273620	1.00[ASN][1000 genomes]
rs10485888	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1157211	0.81[EUR][1000 genomes]
rs17150792	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17150823	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs17431054	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2110870	1.00[CHB][hapmap]
rs4314593	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs4623346	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs59424961	0.90[EUR][1000 genomes]
rs73148374	1.00[ASN][1000 genomes]
rs73148383	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73148393	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7786447	0.81[EUR][1000 genomes]
rs7791794	0.81[EUR][1000 genomes]
rs7794878	1.00[ASN][1000 genomes]
rs7798901	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7803197	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78067000-78079800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr7:78072800-78079600	Weak transcription	Brain Angular Gyrus	brain
3	chr7:78072800-78079800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:78073200-78078400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr7:78073600-78078200	Weak transcription	Brain Substantia Nigra	brain
6	chr7:78073600-78079600	Weak transcription	Brain Anterior Caudate	brain
7	chr7:78077200-78078200	Enhancers	Fetal Heart	heart
8	chr7:78077400-78078000	Enhancers	Brain Hippocampus Middle	brain

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