Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10260177	0.94[TSI][hapmap]
rs10273620	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10485888	1.00[CEU][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs1157211	0.94[TSI][hapmap]
rs17150792	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17150823	1.00[CEU][hapmap];0.83[TSI][hapmap];0.92[EUR][1000 genomes]
rs17353183	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17431054	0.97[EUR][1000 genomes]
rs2110870	1.00[CHB][hapmap]
rs4314593	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs4623346	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs59424961	0.93[EUR][1000 genomes]
rs73148374	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73148383	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73148393	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7779438	0.81[EUR][1000 genomes]
rs7787781	0.94[TSI][hapmap]
rs7791794	0.94[TSI][hapmap]
rs7794878	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7803197	0.94[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7798901	TMPRSS3	trans	lymphoblastoid	seeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78078600-78082400	Weak transcription	Brain Hippocampus Middle	brain
2	chr7:78078800-78080800	Enhancers	Fetal Heart	heart
3	chr7:78078800-78082400	Weak transcription	Brain Substantia Nigra	brain
4	chr7:78079000-78082400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr7:78079600-78080600	Enhancers	Brain Angular Gyrus	brain
6	chr7:78080000-78080400	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr7:78080200-78082400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr7:78080200-78082400	Weak transcription	Brain Anterior Caudate	brain

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