Variant report

Variant	rs17150792
Chromosome Location	chr7:78078993-78078994
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10273620	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10485888	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs17150823	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs17353183	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17431054	0.99[EUR][1000 genomes]
rs2110870	1.00[CHB][hapmap]
rs4314593	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs4623346	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs59424961	0.92[EUR][1000 genomes]
rs73148374	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73148383	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73148393	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7794878	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7798901	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78067000-78079800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr7:78072800-78079600	Weak transcription	Brain Angular Gyrus	brain
3	chr7:78072800-78079800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:78073600-78079600	Weak transcription	Brain Anterior Caudate	brain
5	chr7:78077800-78079000	Enhancers	Fetal Intestine Large	intestine
6	chr7:78078000-78079200	Enhancers	Fetal Intestine Small	intestine
7	chr7:78078400-78079000	Enhancers	Brain Cingulate Gyrus	brain
8	chr7:78078600-78082400	Weak transcription	Brain Hippocampus Middle	brain
9	chr7:78078800-78080800	Enhancers	Fetal Heart	heart
10	chr7:78078800-78082400	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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