Variant report

Variant	rs4329521
Chromosome Location	chr1:10280856-10280857
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10492970	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17034591	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17034601	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17034615	1.00[ASN][1000 genomes]
rs17034616	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17034627	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17034655	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17034660	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17034716	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17034766	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17034775	0.88[ASN][1000 genomes]
rs2297881	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3819096	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs41258245	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57661717	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59211028	0.85[EUR][1000 genomes]
rs61508659	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72864187	0.85[AFR][1000 genomes]
rs72864193	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72864196	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72865913	1.00[ASN][1000 genomes]
rs72865916	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865925	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865926	1.00[ASN][1000 genomes]
rs72865927	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865941	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865946	0.94[ASN][1000 genomes]
rs72865961	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865963	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72865999	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757722	chr1:10238070-10582554	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv2758920	chr1:10238070-10582554	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv999251	chr1:10276263-10318163	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10272600-10284000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr1:10272600-10284000	Weak transcription	Fetal Intestine Small	intestine
3	chr1:10272600-10368200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:10272800-10284000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:10272800-10284400	Weak transcription	Gastric	stomach
6	chr1:10272800-10290000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:10272800-10296600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr1:10274000-10282400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr1:10274000-10285200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr1:10274200-10284600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr1:10274600-10281200	Weak transcription	Fetal Muscle Trunk	muscle
12	chr1:10276600-10281800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr1:10276800-10311800	Weak transcription	Hela-S3	cervix
14	chr1:10277000-10322000	Weak transcription	Spleen	Spleen
15	chr1:10278200-10285000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr1:10278200-10285200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr1:10278400-10281200	Enhancers	Brain Hippocampus Middle	brain
18	chr1:10278400-10281600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr1:10278400-10282400	Weak transcription	Fetal Brain Female	brain
20	chr1:10278400-10283800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr1:10278400-10284400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr1:10278400-10285000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr1:10278400-10285000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr1:10278400-10285000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr1:10278400-10285000	Weak transcription	Aorta	Aorta
26	chr1:10278400-10285000	Weak transcription	Fetal Kidney	kidney
27	chr1:10278400-10285000	Weak transcription	HSMM	muscle
28	chr1:10278400-10285000	Weak transcription	NH-A	brain
29	chr1:10278400-10285200	Weak transcription	Pancreas	Pancrea
30	chr1:10278400-10291000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr1:10278400-10295200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr1:10278400-10302000	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr1:10278600-10282200	Weak transcription	Psoas Muscle	Psoas
34	chr1:10278600-10282600	Weak transcription	A549	lung
35	chr1:10278600-10283800	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr1:10278600-10284400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr1:10278600-10284600	Weak transcription	Fetal Stomach	stomach
38	chr1:10278600-10285000	Weak transcription	Fetal Heart	heart
39	chr1:10278600-10294800	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr1:10278800-10282200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr1:10278800-10282200	Weak transcription	Rectal Smooth Muscle	rectum
42	chr1:10278800-10284200	Weak transcription	Right Atrium	heart
43	chr1:10278800-10285000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr1:10278800-10292400	Weak transcription	Fetal Muscle Leg	muscle
45	chr1:10278800-10296400	Weak transcription	Fetal Lung	lung
46	chr1:10279000-10282000	Weak transcription	Brain Anterior Caudate	brain
47	chr1:10279000-10282200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr1:10279000-10282200	Weak transcription	Adipose Nuclei	Adipose
49	chr1:10279000-10284600	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr1:10279000-10284800	Weak transcription	Osteobl	bone

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