Variant report

Variant	rs4334234
Chromosome Location	chr15:59735645-59735646
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr15:59735546-59736043	GM12891	blood:	n/a	n/a
2	ATF2	chr15:59735473-59735925	GM12878	blood:	n/a	n/a
3	SPI1	chr15:59735539-59735759	GM12878	blood:	n/a	n/a
4	SPI1	chr15:59735457-59736058	GM12891	blood:	n/a	n/a
5	EBF1	chr15:59735587-59735934	GM12878	blood:	n/a	n/a
6	RUNX3	chr15:59735547-59735975	GM12878	blood:	n/a	n/a
7	NFIC	chr15:59735432-59735956	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
FAM81A	TF binding region

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10450987	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10775170	0.81[EUR][1000 genomes]
rs10851658	0.82[EUR][1000 genomes]
rs11071447	0.82[EUR][1000 genomes]
rs11071448	0.82[EUR][1000 genomes]
rs11633115	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11633362	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11637961	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12440926	0.83[EUR][1000 genomes]
rs12913252	0.81[EUR][1000 genomes]
rs3803445	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4078341	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4624109	0.85[EUR][1000 genomes]
rs4628906	0.82[EUR][1000 genomes]
rs4774331	0.84[EUR][1000 genomes]
rs4774332	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4774333	0.81[EUR][1000 genomes]
rs4774334	0.81[EUR][1000 genomes]
rs4775167	0.82[EUR][1000 genomes]
rs4775168	0.82[EUR][1000 genomes]
rs4775172	0.81[EUR][1000 genomes]
rs4775173	0.81[EUR][1000 genomes]
rs56014137	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56041460	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59326013	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62013060	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62013062	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62013066	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62013067	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6494115	0.82[EUR][1000 genomes]
rs7166286	0.82[EUR][1000 genomes]
rs7172008	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7175465	0.81[EUR][1000 genomes]
rs7179571	0.82[EUR][1000 genomes]
rs7182428	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7359171	0.82[EUR][1000 genomes]
rs8024880	0.84[EUR][1000 genomes]
rs8025789	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8025871	0.81[EUR][1000 genomes]
rs8026087	0.84[EUR][1000 genomes]
rs8026519	0.84[EUR][1000 genomes]
rs8028180	0.82[EUR][1000 genomes]
rs8028913	0.81[EUR][1000 genomes]
rs8029197	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8029746	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv904276	chr15:59648633-59743010	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	n/a
3	nsv904278	chr15:59705005-59784648	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59730800-59754800	Weak transcription	Aorta	Aorta
2	chr15:59731000-59737200	Weak transcription	Ovary	ovary
3	chr15:59731000-59739800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:59731200-59737400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr15:59731200-59740000	Weak transcription	Stomach Mucosa	stomach
6	chr15:59731400-59737200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr15:59731400-59737400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:59731400-59752200	Weak transcription	A549	lung
9	chr15:59731600-59735800	Weak transcription	Fetal Kidney	kidney
10	chr15:59731600-59753600	Weak transcription	Fetal Brain Female	brain
11	chr15:59731800-59736000	Weak transcription	Brain Angular Gyrus	brain
12	chr15:59731800-59753400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr15:59732000-59736200	Weak transcription	Fetal Brain Male	brain
14	chr15:59732000-59742000	Weak transcription	Fetal Heart	heart
15	chr15:59732200-59744600	Weak transcription	Hela-S3	cervix
16	chr15:59733400-59735800	Enhancers	Primary B cells from peripheral blood	blood
17	chr15:59734000-59738600	Weak transcription	Duodenum Mucosa	Duodenum
18	chr15:59734000-59739400	Weak transcription	Spleen	Spleen
19	chr15:59734200-59737400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr15:59734400-59735800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr15:59735400-59753800	Weak transcription	Primary B cells from cord blood	blood
22	chr15:59735600-59735800	Enhancers	Brain Anterior Caudate	brain
23	chr15:59735600-59736000	Flanking Active TSS	GM12878-XiMat	blood
24	chr15:59735600-59736600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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