Variant report

Variant	rs4775167
Chromosome Location	chr15:59748488-59748489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:59743359..59746009-chr15:59746792..59749806,3	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10450987	0.82[EUR][1000 genomes]
rs10775170	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10851658	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11071447	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11071448	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11637961	0.82[EUR][1000 genomes]
rs12440926	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12913252	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12913291	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3803445	0.84[EUR][1000 genomes]
rs4078341	0.82[EUR][1000 genomes]
rs4334234	0.82[EUR][1000 genomes]
rs4517730	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4628906	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4774331	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4774332	0.82[EUR][1000 genomes]
rs4774333	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4774334	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4775168	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4775169	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4775172	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4775173	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6494115	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7166286	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7172008	0.82[EUR][1000 genomes]
rs7175465	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7179571	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7182428	0.81[EUR][1000 genomes]
rs7359171	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8024880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8025789	0.82[EUR][1000 genomes]
rs8025871	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8026087	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8026519	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8028180	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8028913	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8029197	0.84[EUR][1000 genomes]
rs8029746	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8030114	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8043466	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv904278	chr15:59705005-59784648	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59730800-59754800	Weak transcription	Aorta	Aorta
2	chr15:59731400-59752200	Weak transcription	A549	lung
3	chr15:59731600-59753600	Weak transcription	Fetal Brain Female	brain
4	chr15:59731800-59753400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr15:59735400-59753800	Weak transcription	Primary B cells from cord blood	blood
6	chr15:59736400-59753400	Weak transcription	Brain Angular Gyrus	brain
7	chr15:59736800-59785000	Weak transcription	Fetal Brain Male	brain
8	chr15:59745600-59749800	Enhancers	Fetal Intestine Small	intestine
9	chr15:59747200-59753400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr15:59747400-59749800	Enhancers	Fetal Intestine Large	intestine
11	chr15:59748200-59749000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr15:59748200-59749200	Enhancers	Stomach Mucosa	stomach
13	chr15:59748200-59749600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr15:59748200-59749600	Enhancers	Duodenum Mucosa	Duodenum
15	chr15:59748200-59749800	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr15:59748200-59749800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr15:59748200-59749800	Enhancers	Placenta	Placenta
18	chr15:59748200-59749800	Enhancers	HMEC	breast
19	chr15:59748400-59748800	Flanking Active TSS	NHEK	skin
20	chr15:59748400-59749000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr15:59748400-59749000	Enhancers	Pancreas	Pancrea
22	chr15:59748400-59749200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr15:59748400-59749200	Enhancers	Esophagus	oesophagus
24	chr15:59748400-59752600	Weak transcription	Brain Substantia Nigra	brain

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