Variant report

Variant	rs4334612
Chromosome Location	chr3:70224889-70224890
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11128165	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4129735	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4393873	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4547664	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4547665	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62254820	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6773726	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6798250	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7431658	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533396	chr3:69964029-70538306	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv834725	chr3:70199671-70395784	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4334612	FAM19A4	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:70224600-70240000	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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