Variant report

Variant	rs62254820
Chromosome Location	chr3:70217145-70217146
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11128165	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4129735	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4334612	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4393873	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4547664	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4547665	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6773726	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6798250	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533396	chr3:69964029-70538306	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv834725	chr3:70199671-70395784	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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