Variant report

Variant	rs4339520
Chromosome Location	chr7:70655941-70655942
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10237330	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10260271	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10281055	0.90[CHB][hapmap]
rs17142911	0.82[CHB][hapmap]
rs28633086	0.81[EUR][1000 genomes]
rs28830240	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62459645	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6969836	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1034662	chr7:70275712-70722953	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv888343	chr7:70641761-70743033	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70651200-70656200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:70651600-70663600	Weak transcription	Fetal Heart	heart
3	chr7:70651600-70666600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:70651800-70656000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr7:70652400-70664400	Weak transcription	Ovary	ovary
6	chr7:70653000-70663200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:70654400-70660200	Weak transcription	Fetal Muscle Leg	muscle
8	chr7:70654800-70663600	Weak transcription	Fetal Lung	lung
9	chr7:70655400-70663400	Weak transcription	Aorta	Aorta
10	chr7:70655600-70656000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr7:70655600-70658200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr7:70655800-70657000	Enhancers	H9 Cell Line	embryonic stem cell
13	chr7:70655800-70665600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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