Variant report

Variant	rs10260271
Chromosome Location	chr7:70664038-70664039
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10216080	0.84[ASN][1000 genomes]
rs10224093	0.84[ASN][1000 genomes]
rs10237330	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10237940	0.84[ASN][1000 genomes]
rs10269157	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10281055	0.90[ASN][1000 genomes]
rs17142901	0.93[ASN][1000 genomes]
rs17142911	0.93[ASN][1000 genomes]
rs28633086	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28830240	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4339520	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62459645	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6969836	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7807224	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1034662	chr7:70275712-70722953	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv888343	chr7:70641761-70743033	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70651600-70666600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:70652400-70664400	Weak transcription	Ovary	ovary
3	chr7:70655800-70665600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr7:70658000-70665200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr7:70661200-70665200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr7:70663200-70664400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:70663400-70664200	Enhancers	Aorta	Aorta
8	chr7:70663400-70664600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr7:70663400-70665200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr7:70663600-70665400	Enhancers	Fetal Lung	lung
11	chr7:70663600-70665400	Enhancers	Left Ventricle	heart
12	chr7:70663800-70664200	Active TSS	Breast Myoepithelial Primary Cells	Breast
13	chr7:70664000-70664200	Enhancers	Right Atrium	heart
14	chr7:70664000-70674000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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