Variant report

Variant	rs7807224
Chromosome Location	chr7:70675645-70675646
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10216080	0.94[CHB][hapmap];0.87[ASN][1000 genomes]
rs10224093	0.89[CHB][hapmap];0.87[ASN][1000 genomes]
rs10237330	0.93[ASN][1000 genomes]
rs10237940	0.94[CHB][hapmap];1.00[CHD][hapmap];0.87[ASN][1000 genomes]
rs10260271	0.90[ASN][1000 genomes]
rs10269157	1.00[ASN][1000 genomes]
rs10281055	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11975543	1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.85[TSI][hapmap]
rs12333866	0.86[CEU][hapmap];0.83[CHB][hapmap]
rs17142901	0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17142911	0.82[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17142940	1.00[CEU][hapmap];0.85[TSI][hapmap]
rs17142946	1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap]
rs28633086	0.95[ASN][1000 genomes]
rs7786009	0.94[CHB][hapmap];0.82[CHD][hapmap]
rs7790269	0.89[CHB][hapmap];0.90[CHD][hapmap]
rs7805734	0.83[CHB][hapmap];0.87[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1034662	chr7:70275712-70722953	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv888343	chr7:70641761-70743033	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70667000-70701400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:70671400-70688600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:70672400-70675800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:70674400-70680000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr7:70674400-70680000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:70674800-70681400	Weak transcription	Fetal Brain Male	brain
7	chr7:70675000-70675800	Enhancers	Fetal Lung	lung
8	chr7:70675200-70677200	Enhancers	Ovary	ovary
9	chr7:70675600-70675800	Enhancers	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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