Variant report

Variant	rs7786009
Chromosome Location	chr7:70692400-70692401
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10216080	1.00[CHB][hapmap];0.85[JPT][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10224093	1.00[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10237940	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11975543	0.89[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12333866	0.88[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17142901	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap]
rs17142911	0.91[CHB][hapmap]
rs17142946	0.89[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs28468498	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3886249	1.00[TSI][hapmap]
rs56964859	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57346600	0.97[ASN][1000 genomes]
rs60605389	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61336371	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73365963	0.97[ASN][1000 genomes]
rs7790269	0.85[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7805734	1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7807224	0.94[CHB][hapmap];0.82[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1034662	chr7:70275712-70722953	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv888343	chr7:70641761-70743033	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv1801758	chr7:70689429-70692400	Enhancers Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70667000-70701400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:70684200-70692400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr7:70686000-70692800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:70686800-70692800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:70687000-70700600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr7:70688000-70694000	Weak transcription	Right Ventricle	heart
7	chr7:70688000-70701200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr7:70689600-70692800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr7:70689800-70692800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:70690400-70697200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr7:70691600-70693600	Enhancers	Ovary	ovary
12	chr7:70691800-70700800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:70692000-70692800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr7:70692000-70694400	Weak transcription	Left Ventricle	heart
15	chr7:70692400-70693000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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