Variant report

Variant	rs60605389
Chromosome Location	chr7:70693709-70693710
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10216080	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10224093	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10237940	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11975543	0.95[ASN][1000 genomes]
rs12333866	0.97[ASN][1000 genomes]
rs17142901	0.81[AMR][1000 genomes]
rs17142911	0.81[AMR][1000 genomes]
rs17142946	0.97[ASN][1000 genomes]
rs28468498	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56964859	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57346600	0.97[ASN][1000 genomes]
rs61336371	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73365963	0.97[ASN][1000 genomes]
rs7786009	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7790269	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7805734	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1034662	chr7:70275712-70722953	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv888343	chr7:70641761-70743033	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70667000-70701400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:70687000-70700600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr7:70688000-70694000	Weak transcription	Right Ventricle	heart
4	chr7:70688000-70701200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr7:70690400-70697200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:70691800-70700800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:70692000-70694400	Weak transcription	Left Ventricle	heart
8	chr7:70692800-70694800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr7:70693000-70693800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
10	chr7:70693200-70701600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr7:70693400-70695400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr7:70693400-70700800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr7:70693400-70701200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr7:70693600-70694000	Weak transcription	Ovary	ovary

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links