Variant report
| Variant | rs4340718 |
|---|---|
| Chromosome Location | chr3:161768924-161768925 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs1027921 | 0.84[EUR][1000 genomes] |
| rs1119974 | 0.83[EUR][1000 genomes] |
| rs12696134 | 0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1355290 | 0.82[EUR][1000 genomes] |
| rs1397238 | 0.84[EUR][1000 genomes] |
| rs1397239 | 0.84[EUR][1000 genomes] |
| rs1510346 | 0.84[EUR][1000 genomes] |
| rs1813301 | 0.85[EUR][1000 genomes] |
| rs2089737 | 0.85[EUR][1000 genomes] |
| rs2136712 | 0.84[EUR][1000 genomes] |
| rs2175265 | 0.84[EUR][1000 genomes] |
| rs4241434 | 0.82[EUR][1000 genomes] |
| rs4312667 | 0.82[EUR][1000 genomes] |
| rs4602407 | 0.82[EUR][1000 genomes] |
| rs4856668 | 0.85[EUR][1000 genomes] |
| rs4856743 | 0.82[EUR][1000 genomes] |
| rs6789187 | 0.85[EUR][1000 genomes] |
| rs6789851 | 0.85[EUR][1000 genomes] |
| rs7635026 | 0.82[EUR][1000 genomes] |
| rs9816747 | 0.84[EUR][1000 genomes] |
| rs9819461 | 0.84[EUR][1000 genomes] |
| rs9876455 | 0.85[EUR][1000 genomes] |
| rs9882103 | 0.81[EUR][1000 genomes] |
| rs9883680 | 0.85[EUR][1000 genomes] |
| rs993596 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533237 | chr3:161019834-161804660 | Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 91 gene(s) | inside rSNPs | diseases |
| 2 | nsv460918 | chr3:161754109-161791399 | Enhancers Weak transcription Active TSS ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
| 3 | nsv592143 | chr3:161754109-161791399 | Enhancers Weak transcription Active TSS ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
| 4 | esv2034625 | chr3:161768909-161769333 | Weak transcription Enhancers | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:161766600-161771000 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 2 | chr3:161768000-161769000 | Enhancers | iPS-18 Cell Line | embryonic stem cell |
