Variant report

Variant	rs6789187
Chromosome Location	chr3:161762349-161762350
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs1027921	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1119974	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1119975	0.81[ASN][1000 genomes]
rs1119976	0.81[ASN][1000 genomes]
rs12631615	0.81[ASN][1000 genomes]
rs12637049	0.81[ASN][1000 genomes]
rs12638402	0.87[ASN][1000 genomes]
rs12638648	0.81[ASN][1000 genomes]
rs12638716	0.81[ASN][1000 genomes]
rs12696134	0.81[EUR][1000 genomes]
rs13067265	0.80[ASN][1000 genomes]
rs13067436	0.80[ASN][1000 genomes]
rs13085452	0.81[ASN][1000 genomes]
rs13085482	0.81[ASN][1000 genomes]
rs13090130	0.81[ASN][1000 genomes]
rs13090291	0.82[ASN][1000 genomes]
rs13097361	0.81[ASN][1000 genomes]
rs1355290	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1397238	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1397239	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1510346	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1581057	0.87[ASN][1000 genomes]
rs1813301	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2089737	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2102508	0.81[ASN][1000 genomes]
rs2102509	0.81[ASN][1000 genomes]
rs2136712	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2175265	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34869298	0.81[ASN][1000 genomes]
rs34880574	0.81[ASN][1000 genomes]
rs35298688	0.81[ASN][1000 genomes]
rs35648700	0.81[ASN][1000 genomes]
rs35888322	0.81[ASN][1000 genomes]
rs4241434	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4312667	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4340718	0.85[EUR][1000 genomes]
rs4355296	0.88[ASN][1000 genomes]
rs4355297	0.88[ASN][1000 genomes]
rs4465957	0.88[ASN][1000 genomes]
rs4508798	0.88[ASN][1000 genomes]
rs4602407	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4611839	0.81[ASN][1000 genomes]
rs4856663	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4856668	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4856669	0.81[ASN][1000 genomes]
rs4856742	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4856743	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4856744	0.81[ASN][1000 genomes]
rs4856746	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs56210893	0.81[ASN][1000 genomes]
rs62278873	0.81[ASN][1000 genomes]
rs6762210	0.81[ASN][1000 genomes]
rs6776232	0.81[ASN][1000 genomes]
rs6778769	0.99[ASN][1000 genomes]
rs6779195	0.81[ASN][1000 genomes]
rs6789427	0.81[ASN][1000 genomes]
rs6789851	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6791872	0.81[ASN][1000 genomes]
rs6800261	0.81[ASN][1000 genomes]
rs7432475	0.81[ASN][1000 genomes]
rs7615800	0.81[ASN][1000 genomes]
rs7618729	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7635026	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7637893	0.81[ASN][1000 genomes]
rs9290111	0.88[ASN][1000 genomes]
rs9814837	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9816747	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9819073	0.88[ASN][1000 genomes]
rs9819461	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9876455	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9882103	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9883680	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs993596	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	nsv460918	chr3:161754109-161791399	Enhancers Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
3	nsv592143	chr3:161754109-161791399	Enhancers Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161759200-161765000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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