Variant report
| Variant | rs4345072 |
|---|---|
| Chromosome Location | chr3:68353956-68353957 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:68344569..68347557-chr3:68353420..68355980,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs10155009 | 0.86[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap] |
| rs1491743 | 1.00[CHB][hapmap] |
| rs1491756 | 1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.87[YRI][hapmap] |
| rs1491757 | 1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap] |
| rs169023 | 1.00[CHB][hapmap];0.81[CHD][hapmap];0.88[GIH][hapmap];0.86[MEX][hapmap] |
| rs187794 | 1.00[CHB][hapmap] |
| rs262232 | 1.00[CHB][hapmap];0.81[CHD][hapmap];0.85[GIH][hapmap] |
| rs4378971 | 0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap] |
| rs6549115 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap] |
| rs6549116 | 1.00[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];0.90[MEX][hapmap] |
| rs6770136 | 1.00[CHB][hapmap] |
| rs6783358 | 1.00[CHB][hapmap] |
| rs7614996 | 1.00[CHB][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2752014 | chr3:68091879-68416989 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1010992 | chr3:68353191-68388825 | Weak transcription Enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs4345072 | FOXP1 | cis | parietal | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
