Variant report

Variant	rs6549115
Chromosome Location	chr3:68355872-68355873
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10155009	0.86[ASW][hapmap];0.89[CEU][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap]
rs1491756	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.87[YRI][hapmap]
rs1491757	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap]
rs169023	0.86[MEX][hapmap]
rs4345072	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap]
rs4378971	0.94[CEU][hapmap];0.87[YRI][hapmap]
rs6549116	0.90[MEX][hapmap]
rs9822608	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752014	chr3:68091879-68416989	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1010992	chr3:68353191-68388825	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6549115	FOXP1	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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