Variant report
| Variant | rs4351181 |
|---|---|
| Chromosome Location | chr5:91622692-91622693 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:3)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:3 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | STAT3 | chr5:91622570-91622770 | MCF10A-Er-Src | breast: | n/a | n/a |
| 2 | TCF7L2 | chr5:91622690-91622854 | PANC-1 | pancreas: | n/a | n/a |
| 3 | POLR2A | chr5:91622550-91622750 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000248864 | TF binding region |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs4485908 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4565246 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60047729 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60899707 | 1.00[EUR][1000 genomes] |
| rs73129459 | 0.81[AFR][1000 genomes] |
| rs73129478 | 0.81[AFR][1000 genomes] |
| rs73129482 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73129483 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73131509 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73131513 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73131588 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73133057 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73133062 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73133075 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73133077 | 1.00[EUR][1000 genomes] |
| rs73133079 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73134921 | 1.00[EUR][1000 genomes] |
| rs73134929 | 1.00[EUR][1000 genomes] |
| rs73134939 | 1.00[EUR][1000 genomes] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
