Variant report

Variant	rs73131513
Chromosome Location	chr5:91571644-91571645
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs4351181	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4485908	0.81[AFR][1000 genomes]
rs4565246	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60047729	0.81[AFR][1000 genomes]
rs6885172	1.00[EUR][1000 genomes]
rs73129459	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73129478	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73129482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73129483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73131509	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73131588	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73133057	0.81[AFR][1000 genomes]
rs73133062	0.81[AFR][1000 genomes]
rs73133075	0.81[AFR][1000 genomes]
rs73133079	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882378	chr5:91477046-91601492	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:91567600-91571800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links