Variant report
Variant | rs6885172 |
---|---|
Chromosome Location | chr5:91362344-91362345 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs13361969 | 1.00[EUR][1000 genomes] |
rs1427952 | 1.00[EUR][1000 genomes] |
rs16870268 | 1.00[EUR][1000 genomes] |
rs16870279 | 1.00[EUR][1000 genomes] |
rs16870281 | 1.00[EUR][1000 genomes] |
rs16870312 | 1.00[EUR][1000 genomes] |
rs16870375 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs4565246 | 1.00[EUR][1000 genomes] |
rs56229231 | 1.00[EUR][1000 genomes] |
rs6873710 | 1.00[EUR][1000 genomes] |
rs6882105 | 1.00[EUR][1000 genomes] |
rs73129459 | 1.00[EUR][1000 genomes] |
rs73129478 | 1.00[EUR][1000 genomes] |
rs73129482 | 1.00[EUR][1000 genomes] |
rs73129483 | 1.00[EUR][1000 genomes] |
rs73129583 | 1.00[EUR][1000 genomes] |
rs73131509 | 1.00[EUR][1000 genomes] |
rs73131513 | 1.00[EUR][1000 genomes] |
rs73773202 | 1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv882375 | chr5:91144658-91383848 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
2 | nsv830397 | chr5:91213921-91396644 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
3 | nsv471023 | chr5:91275312-91477046 | Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
4 | nsv598937 | chr5:91275313-91381882 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
5 | esv3399231 | chr5:91340245-91365878 | ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:91360800-91363200 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |