Variant report

Variant	rs16870268
Chromosome Location	chr5:91234707-91234708
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13361969	1.00[EUR][1000 genomes]
rs1346446	1.00[EUR][1000 genomes]
rs1427952	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16870279	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16870281	1.00[EUR][1000 genomes]
rs16870312	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16870375	1.00[EUR][1000 genomes]
rs56229231	1.00[EUR][1000 genomes]
rs6873710	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6882105	1.00[EUR][1000 genomes]
rs6885172	1.00[EUR][1000 genomes]
rs73129583	1.00[EUR][1000 genomes]
rs73773202	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7712798	1.00[EUR][1000 genomes]
rs7721102	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882370	chr5:90986181-91287437	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830396	chr5:91121355-91343236	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv882373	chr5:91144658-91275313	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv882374	chr5:91144658-91287437	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv882375	chr5:91144658-91383848	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv830397	chr5:91213921-91396644	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:91211000-91237600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:91232400-91234800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:91232600-91235400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:91234200-91234800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr5:91234200-91234800	Enhancers	Osteobl	bone
6	chr5:91234200-91235000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:91234200-91235000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr5:91234200-91235000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:91234400-91234800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr5:91234400-91235000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr5:91234400-91235000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr5:91234400-91235800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr5:91234600-91235600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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