Variant report

Variant	rs4354281
Chromosome Location	chr8:108291703-108291704
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:108080682..108081545-chr8:108290829..108291800,3	MCF-7	breast:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10101176	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs10105844	0.81[AFR][1000 genomes]
rs10108610	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs10156232	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs10505102	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10955449	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10955450	0.95[CHB][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes]
rs11774043	0.94[CHB][hapmap];0.89[JPT][hapmap];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11775037	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11781223	0.90[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11781621	0.95[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes]
rs11997995	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13252714	0.96[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13257393	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13264444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13264884	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13266757	0.82[AMR][1000 genomes]
rs13270051	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13273632	0.95[CHB][hapmap];0.85[JPT][hapmap];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13278421	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13279592	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1368496	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs1433178	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs16876056	0.95[CHB][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes]
rs17296316	0.88[CHB][hapmap];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17361877	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17368715	0.95[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17368821	0.95[CHB][hapmap];0.85[JPT][hapmap];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2043339	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs2168410	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2436556	0.85[AMR][1000 genomes]
rs2445356	0.85[AMR][1000 genomes]
rs2514851	0.85[AMR][1000 genomes]
rs2514853	0.89[AMR][1000 genomes]
rs2514879	0.83[CEU][hapmap]
rs28636468	0.82[AMR][1000 genomes]
rs34248555	0.82[AMR][1000 genomes]
rs34294284	0.91[ASN][1000 genomes]
rs34540943	0.84[ASN][1000 genomes]
rs34597339	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34954748	0.89[ASN][1000 genomes]
rs35143736	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35855686	0.82[AMR][1000 genomes]
rs4236784	0.83[YRI][hapmap];0.81[AFR][1000 genomes]
rs4262299	0.95[CHB][hapmap];0.81[JPT][hapmap];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4341141	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4341142	0.95[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4506178	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4595097	0.82[YRI][hapmap]
rs4599779	0.83[YRI][hapmap]
rs57025371	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62512845	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7000466	0.82[AMR][1000 genomes]
rs7816923	0.82[YRI][hapmap]
rs7820261	0.81[AFR][1000 genomes]
rs7829652	0.81[AFR][1000 genomes]
rs7843054	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7846052	0.82[YRI][hapmap];0.81[AFR][1000 genomes]
rs9650029	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029202	chr8:107796289-108384241	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv539712	chr8:107796289-108384241	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1034210	chr8:107796489-108384102	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv539713	chr8:107796489-108384102	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv529383	chr8:107796490-108368465	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv915821	chr8:107796490-108393008	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv916496	chr8:107813722-108338822	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1028726	chr8:107816841-108392547	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv497805	chr8:107852509-108368371	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	esv2764100	chr8:108220671-108469233	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv1030831	chr8:108224295-108466437	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	nsv539714	chr8:108224295-108466437	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	nsv465760	chr8:108224687-108485912	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
14	nsv611851	chr8:108224687-108485912	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
15	nsv891266	chr8:108234516-108307058	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:108257800-108305400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr8:108275400-108305600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr8:108276600-108327600	Weak transcription	Aorta	Aorta
4	chr8:108278400-108310400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr8:108282800-108306200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr8:108282800-108321000	Weak transcription	Psoas Muscle	Psoas
7	chr8:108285800-108296200	Weak transcription	Right Ventricle	heart
8	chr8:108287200-108294000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr8:108288400-108295000	Weak transcription	Adipose Nuclei	Adipose
10	chr8:108288800-108307000	Weak transcription	Osteobl	bone
11	chr8:108289200-108299200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr8:108290000-108294200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr8:108290200-108299800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr8:108290600-108292800	Strong transcription	Fetal Lung	lung
15	chr8:108290600-108294200	Strong transcription	Primary hematopoietic stem cells	blood
16	chr8:108290800-108296600	Strong transcription	K562	blood
17	chr8:108291200-108295000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr8:108291200-108298200	Weak transcription	H9 Cell Line	embryonic stem cell

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