Variant report
| Variant | rs4355051 |
|---|---|
| Chromosome Location | chr2:209743974-209743975 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:209742377..209744690-chr2:209780738..209782515,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10445801 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs11903351 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs12694136 | 0.82[AMR][1000 genomes] |
| rs4260181 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs4261669 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs4308076 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs4318334 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs4324271 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs4324272 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs4389270 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4494669 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs4564719 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs4632272 | 0.81[AMR][1000 genomes] |
| rs6435477 | 0.83[AMR][1000 genomes] |
| rs6732564 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs6748139 | 0.81[AMR][1000 genomes] |
| rs6748502 | 0.82[AMR][1000 genomes] |
| rs6751164 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs6757553 | 0.81[AMR][1000 genomes] |
| rs7573846 | 0.80[EUR][1000 genomes] |
| rs7587883 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs7604829 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs9288401 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv875755 | chr2:209563753-209745017 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv875756 | chr2:209635009-209745017 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv875757 | chr2:209659222-209755059 | Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv875758 | chr2:209676037-209784089 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv875759 | chr2:209692190-209784089 | Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:209743800-209745200 | Enhancers | Placenta Amnion | Placenta Amnion |
