Variant report

Variant	rs4355280
Chromosome Location	chr3:133468425-133468426
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10433417	0.95[ASN][1000 genomes]
rs11921527	0.94[ASN][1000 genomes]
rs12493887	0.95[ASN][1000 genomes]
rs12639304	0.95[ASN][1000 genomes]
rs4459901	0.81[ASN][1000 genomes]
rs4481157	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6439431	0.94[ASN][1000 genomes]
rs6439435	0.97[ASN][1000 genomes]
rs6774822	0.92[ASN][1000 genomes]
rs6775042	0.95[ASN][1000 genomes]
rs6777860	0.92[ASN][1000 genomes]
rs6780650	0.94[ASN][1000 genomes]
rs6787177	0.97[ASN][1000 genomes]
rs6790668	0.89[ASN][1000 genomes]
rs6798547	0.94[ASN][1000 genomes]
rs7646118	0.97[ASN][1000 genomes]
rs8177177	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8177178	0.83[ASN][1000 genomes]
rs9829019	0.96[ASN][1000 genomes]
rs9831392	0.98[ASN][1000 genomes]
rs9869257	0.97[ASN][1000 genomes]
rs9869535	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877506	chr3:133423473-133569777	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv829729	chr3:133444871-133620387	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv877507	chr3:133465201-133473516	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133465600-133483000	Weak transcription	Brain Germinal Matrix	brain
2	chr3:133465800-133469000	Weak transcription	Pancreas	Pancrea
3	chr3:133465800-133470000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr3:133466800-133476800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:133467000-133469400	Transcr. at gene 5' and 3'	Liver	Liver
6	chr3:133467000-133470000	Transcr. at gene 5' and 3'	HepG2	liver
7	chr3:133467200-133468800	Weak transcription	Adipose Nuclei	Adipose
8	chr3:133467400-133468600	Active TSS	Brain Hippocampus Middle	brain
9	chr3:133467400-133468800	Active TSS	Brain Anterior Caudate	brain
10	chr3:133467600-133469600	Enhancers	K562	blood
11	chr3:133468000-133468800	Flanking Active TSS	Brain Substantia Nigra	brain
12	chr3:133468400-133468800	Flanking Active TSS	Brain Angular Gyrus	brain
13	chr3:133468400-133469000	Transcr. at gene 5' and 3'	Brain Cingulate Gyrus	brain
14	chr3:133468400-133469200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
15	chr3:133468400-133469400	Enhancers	Esophagus	oesophagus
16	chr3:133468400-133469600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links