Variant report

Variant	rs6790668
Chromosome Location	chr3:133442481-133442482
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10433417	0.89[ASN][1000 genomes]
rs11921527	0.91[ASN][1000 genomes]
rs12493887	0.91[ASN][1000 genomes]
rs12639304	0.91[ASN][1000 genomes]
rs4355280	0.89[ASN][1000 genomes]
rs4481157	0.91[ASN][1000 genomes]
rs6439431	0.89[ASN][1000 genomes]
rs6439435	0.93[ASN][1000 genomes]
rs6774822	0.88[ASN][1000 genomes]
rs6775042	0.91[ASN][1000 genomes]
rs6777860	0.88[ASN][1000 genomes]
rs6780650	0.88[ASN][1000 genomes]
rs6787177	0.93[ASN][1000 genomes]
rs6798547	0.90[ASN][1000 genomes]
rs7646118	0.93[ASN][1000 genomes]
rs8177177	0.91[ASN][1000 genomes]
rs9829019	0.89[ASN][1000 genomes]
rs9831392	0.91[ASN][1000 genomes]
rs9869257	0.93[ASN][1000 genomes]
rs9869535	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877506	chr3:133423473-133569777	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv963279	chr3:133426521-133449029	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv528713	chr3:133437778-133450371	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6790668	TF	cis	Esophagus Mucosa	GTEx
rs6790668	TFP1	cis	Esophagus Mucosa	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133442000-133453200	Weak transcription	Brain Inferior Temporal Lobe	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links