Variant report

Variant	rs4356975
Chromosome Location	chr4:69972463-69972464
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 120 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs11249523	0.94[CHB][hapmap]
rs11249525	0.89[CHB][hapmap]
rs11249526	0.94[CHB][hapmap]
rs11249527	0.94[CHB][hapmap]
rs11249528	0.89[CHB][hapmap]
rs11940316	0.89[CHB][hapmap];0.92[CHD][hapmap]
rs12506962	0.89[CHB][hapmap];0.92[CHD][hapmap]
rs12512526	0.89[CHB][hapmap];0.92[CHD][hapmap]
rs12513195	0.89[CHB][hapmap];0.92[CHD][hapmap]
rs12642938	0.89[CHB][hapmap]
rs12648808	0.87[EUR][1000 genomes]
rs12648830	0.95[CEU][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs3922514	0.82[CEU][hapmap]
rs3924192	0.89[CHB][hapmap];0.92[CHD][hapmap]
rs4274916	0.89[CHB][hapmap];0.92[CHD][hapmap]
rs4293848	0.89[CHB][hapmap];0.92[CHD][hapmap]
rs4327554	0.89[CHB][hapmap];0.92[CHD][hapmap]
rs4351080	0.89[CHB][hapmap]
rs4371687	0.89[CHB][hapmap]
rs4371688	0.89[CHB][hapmap]
rs4400060	0.95[CEU][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs4400061	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs4410590	0.87[EUR][1000 genomes]
rs4412058	0.87[EUR][1000 genomes]
rs4413468	0.82[CEU][hapmap]
rs4446390	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs4516791	0.87[EUR][1000 genomes]
rs4521414	0.89[CHB][hapmap];0.92[CHD][hapmap]
rs4522933	0.88[CHB][hapmap]
rs4535394	0.89[CHB][hapmap];0.92[CHD][hapmap]
rs4541594	0.89[CHB][hapmap]
rs4554144	0.89[CHB][hapmap]
rs4583828	0.82[CEU][hapmap]
rs4587017	0.89[CHB][hapmap];0.92[CHD][hapmap]
rs4611997	0.87[EUR][1000 genomes]
rs4618380	0.85[EUR][1000 genomes]
rs4640729	0.84[CHB][hapmap]
rs4694159	0.87[EUR][1000 genomes]
rs4694160	0.87[EUR][1000 genomes]
rs4694169	0.81[CHB][hapmap]
rs4694597	0.87[EUR][1000 genomes]
rs4694602	0.87[EUR][1000 genomes]
rs4694604	0.87[EUR][1000 genomes]
rs4694605	0.87[EUR][1000 genomes]
rs4694607	0.87[EUR][1000 genomes]
rs4694610	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs4694611	0.88[EUR][1000 genomes]
rs4694612	0.85[EUR][1000 genomes]
rs55778959	0.85[EUR][1000 genomes]
rs56879009	0.88[EUR][1000 genomes]
rs58496756	0.87[EUR][1000 genomes]
rs60814050	0.86[EUR][1000 genomes]
rs61612343	0.88[EUR][1000 genomes]
rs6422323	0.89[CHB][hapmap]
rs6600867	0.87[EUR][1000 genomes]
rs6600876	0.89[CHB][hapmap];0.92[CHD][hapmap]
rs6600884	0.89[CHB][hapmap];0.92[CHD][hapmap]
rs6600891	0.89[CHB][hapmap];0.92[CHD][hapmap]
rs6600893	0.89[CHB][hapmap];0.90[CHD][hapmap]
rs6600897	0.89[CHB][hapmap];0.92[CHD][hapmap]
rs6600899	0.89[EUR][1000 genomes]
rs6843382	0.88[CHB][hapmap]
rs6851533	0.84[CHB][hapmap];0.92[CHD][hapmap]
rs6858558	0.89[CHB][hapmap];0.92[CHD][hapmap]
rs72852416	0.87[EUR][1000 genomes]
rs72852450	0.88[EUR][1000 genomes]
rs7375178	0.89[CHB][hapmap];0.92[CHD][hapmap]
rs7434332	0.89[CHB][hapmap]
rs7434389	0.87[EUR][1000 genomes]
rs7436912	0.87[EUR][1000 genomes]
rs7437174	0.89[CHB][hapmap]
rs7438033	0.82[CEU][hapmap]
rs7438135	0.89[CHB][hapmap];0.92[CHD][hapmap]
rs7439152	0.89[CHB][hapmap];0.92[CHD][hapmap]
rs7439366	0.89[CHB][hapmap]
rs7439419	0.86[EUR][1000 genomes]
rs7441365	0.87[EUR][1000 genomes]
rs7441774	0.89[CHB][hapmap];0.90[CHD][hapmap]
rs7442394	0.87[EUR][1000 genomes]
rs7442453	0.84[CHB][hapmap]
rs7654272	0.87[EUR][1000 genomes]
rs7657423	0.84[CHB][hapmap];0.92[CHD][hapmap]
rs7657426	0.91[CEU][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs7658748	0.87[EUR][1000 genomes]
rs7659987	0.86[EUR][1000 genomes]
rs7660019	0.84[EUR][1000 genomes]
rs7662029	0.89[CHB][hapmap];0.90[CHD][hapmap]
rs7662632	0.95[CEU][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs7668258	0.84[CHB][hapmap];0.92[CHD][hapmap]
rs7673294	0.80[EUR][1000 genomes]
rs7674573	0.87[EUR][1000 genomes]
rs7674600	0.87[EUR][1000 genomes]
rs7676472	0.89[CHB][hapmap]
rs7677996	0.95[CEU][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs7679184	0.89[CHB][hapmap];0.92[CHD][hapmap]
rs7679418	0.88[EUR][1000 genomes]
rs7680156	0.88[EUR][1000 genomes]
rs7687336	0.87[EUR][1000 genomes]
rs7687725	0.87[EUR][1000 genomes]
rs7692377	0.88[EUR][1000 genomes]
rs7698430	0.87[EUR][1000 genomes]
rs7698645	0.89[CHB][hapmap]
rs7699955	0.87[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999654	chr4:69661415-70132110	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	esv3420586	chr4:69680878-70322918	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	nsv1067773	chr4:69718248-70715727	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	esv3468151	chr4:69718675-70322776	Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
5	esv3468153	chr4:69718675-70322776	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
6	nsv594582	chr4:69827340-69988378	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv879379	chr4:69878929-69987249	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv594583	chr4:69928642-69988378	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv427683	chr4:69929701-70414172	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
10	nsv522091	chr4:69932587-69988378	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv999858	chr4:69933262-70676525	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
12	nsv1000261	chr4:69954600-70642254	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
13	nsv537134	chr4:69954600-70642254	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
14	nsv879380	chr4:69961912-70046930	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
15	nsv964059	chr4:69962051-69983787	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	nsv879381	chr4:69972086-70046930	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
17	nsv879382	chr4:69972086-70066719	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Obesity-related traits	23251661	GWAS catalog

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4356975	ANKRD17	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:69959600-69980000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:69963000-69982000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr4:69970000-69980400	Weak transcription	Fetal Intestine Small	intestine
4	chr4:69971000-69981200	Weak transcription	Pancreas	Pancrea
5	chr4:69971400-69981400	Weak transcription	HepG2	liver
6	chr4:69972000-69980400	Strong transcription	Liver	Liver

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