Variant report

Variant	rs7439366
Chromosome Location	chr4:69964338-69964339
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:69964055..69967936-chr4:69969110..69971498,3	K562	blood:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11249523	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11249525	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11249526	1.00[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap]
rs11249527	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs11249528	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11940316	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12506962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12512526	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12513195	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12642938	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12646327	0.85[CEU][hapmap]
rs3924192	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4274916	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs4292394	0.89[AMR][1000 genomes]
rs4293848	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4309908	0.90[CEU][hapmap]
rs4318715	0.80[CEU][hapmap]
rs4327554	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs4351080	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4356975	0.89[CHB][hapmap]
rs4371687	0.89[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs4371688	0.90[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4385139	0.89[CEU][hapmap]
rs4521414	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4522933	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4535394	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs4541594	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4554144	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4587017	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4640729	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4694169	0.88[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap]
rs6422323	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6422324	1.00[CEU][hapmap]
rs6600876	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6600884	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6600891	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6600893	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs6600897	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs6600898	0.80[CEU][hapmap]
rs6819757	0.80[AMR][1000 genomes]
rs6820734	0.85[CEU][hapmap]
rs6843382	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6851533	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs6858558	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7375178	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7434332	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7437174	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7438135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7439152	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7441774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7442453	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs7442486	0.85[CEU][hapmap]
rs7657423	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs7662029	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7668258	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs7676472	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7679184	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7698645	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7699955	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999654	chr4:69661415-70132110	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	esv3420586	chr4:69680878-70322918	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	nsv1067773	chr4:69718248-70715727	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	esv3468151	chr4:69718675-70322776	Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
5	esv3468153	chr4:69718675-70322776	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
6	nsv594582	chr4:69827340-69988378	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv879379	chr4:69878929-69987249	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv594583	chr4:69928642-69988378	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv427683	chr4:69929701-70414172	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
10	nsv522091	chr4:69932587-69988378	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv999858	chr4:69933262-70676525	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
12	nsv1000261	chr4:69954600-70642254	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
13	nsv537134	chr4:69954600-70642254	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
14	nsv879380	chr4:69961912-70046930	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
15	nsv964059	chr4:69962051-69983787	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:69959600-69980000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:69962200-69966600	Active TSS	Liver	Liver
3	chr4:69962600-69970400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr4:69962800-69964400	Weak transcription	Stomach Mucosa	stomach
5	chr4:69962800-69966400	Enhancers	HepG2	liver
6	chr4:69963000-69964400	Weak transcription	A549	lung
7	chr4:69963000-69964600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr4:69963000-69968000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:69963000-69982000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr4:69963400-69970400	Weak transcription	Fetal Intestine Large	intestine
11	chr4:69964000-69964400	Enhancers	Fetal Intestine Small	intestine

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