Variant report
| Variant | rs4358292 |
|---|---|
| Chromosome Location | chr3:53999541-53999542 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:53998431..54000107-chr3:54002704..54004955,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs28385736 | 1.00[EUR][1000 genomes] |
| rs4364155 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4687764 | 1.00[EUR][1000 genomes] |
| rs55940822 | 1.00[EUR][1000 genomes] |
| rs55971211 | 1.00[EUR][1000 genomes] |
| rs59150035 | 1.00[EUR][1000 genomes] |
| rs60408413 | 1.00[EUR][1000 genomes] |
| rs61026534 | 1.00[EUR][1000 genomes] |
| rs6445623 | 1.00[EUR][1000 genomes] |
| rs6797145 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72974991 | 1.00[EUR][1000 genomes] |
| rs72975002 | 1.00[EUR][1000 genomes] |
| rs72976731 | 1.00[EUR][1000 genomes] |
| rs72976732 | 1.00[EUR][1000 genomes] |
| rs73841260 | 1.00[EUR][1000 genomes] |
| rs7623521 | 1.00[EUR][1000 genomes] |
| rs7650910 | 1.00[EUR][1000 genomes] |
| rs9812910 | 1.00[EUR][1000 genomes] |
| rs9863533 | 1.00[EUR][1000 genomes] |
| rs9864400 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1003621 | chr3:53448934-54425322 | Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| 2 | nsv1006990 | chr3:53849510-54285212 | Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 3 | nsv1014752 | chr3:53912429-54123246 | Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 4 | nsv1005411 | chr3:53927782-54158638 | Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 5 | nsv1014595 | chr3:53944473-54846754 | Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:53997800-53999800 | Weak transcription | Spleen | Spleen |
