Variant report

Variant	rs6445623
Chromosome Location	chr3:54029397-54029398
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:54027788..54029869-chr3:54035000..54037440,2	K562	blood:
2	chr3:54026756..54029485-chr3:54031370..54034068,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs28385736	1.00[EUR][1000 genomes]
rs4358292	1.00[EUR][1000 genomes]
rs4364155	1.00[EUR][1000 genomes]
rs4687764	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55940822	1.00[EUR][1000 genomes]
rs55971211	1.00[EUR][1000 genomes]
rs59150035	1.00[EUR][1000 genomes]
rs60408413	1.00[EUR][1000 genomes]
rs61026534	1.00[EUR][1000 genomes]
rs6797145	1.00[EUR][1000 genomes]
rs72974991	1.00[EUR][1000 genomes]
rs72975002	1.00[EUR][1000 genomes]
rs72976731	1.00[EUR][1000 genomes]
rs72976732	1.00[EUR][1000 genomes]
rs73841260	1.00[EUR][1000 genomes]
rs7623521	1.00[EUR][1000 genomes]
rs7650910	1.00[EUR][1000 genomes]
rs9812910	1.00[EUR][1000 genomes]
rs9863533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9864400	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1006990	chr3:53849510-54285212	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1014752	chr3:53912429-54123246	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1005411	chr3:53927782-54158638	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv523473	chr3:54010039-54033865	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54028800-54029600	Enhancers	Brain Angular Gyrus	brain
2	chr3:54028800-54030000	Enhancers	Hela-S3	cervix
3	chr3:54028800-54030600	Enhancers	Right Atrium	heart
4	chr3:54029200-54031600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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